These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 21788211)

  • 41. RNA structure prediction from evolutionary patterns of nucleotide composition.
    Smit S; Knight R; Heringa J
    Nucleic Acids Res; 2009 Apr; 37(5):1378-86. PubMed ID: 19129237
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Predicting pseudoknotted structures across two RNA sequences.
    Sperschneider J; Datta A; Wise MJ
    Bioinformatics; 2012 Dec; 28(23):3058-65. PubMed ID: 23044552
    [TBL] [Abstract][Full Text] [Related]  

  • 43. TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.
    Tan Z; Fu Y; Sharma G; Mathews DH
    Nucleic Acids Res; 2017 Nov; 45(20):11570-11581. PubMed ID: 29036420
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Local sequence-structure motifs in RNA.
    Backofen R; Will S
    J Bioinform Comput Biol; 2004 Dec; 2(4):681-98. PubMed ID: 15617161
    [TBL] [Abstract][Full Text] [Related]  

  • 45. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Maximum expected accuracy structural neighbors of an RNA secondary structure.
    Clote P; Lou F; Lorenz WA
    BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S6. PubMed ID: 22537010
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Mining frequent stem patterns from unaligned RNA sequences.
    Hamada M; Tsuda K; Kudo T; Kin T; Asai K
    Bioinformatics; 2006 Oct; 22(20):2480-7. PubMed ID: 16908501
    [TBL] [Abstract][Full Text] [Related]  

  • 48. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 49. TOPAS: network-based structural alignment of RNA sequences.
    Chen CC; Jeong H; Qian X; Yoon BJ
    Bioinformatics; 2019 Sep; 35(17):2941-2948. PubMed ID: 30629122
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Predicting RNA structure using mutual information.
    Freyhult E; Moulton V; Gardner P
    Appl Bioinformatics; 2005; 4(1):53-9. PubMed ID: 16000013
    [TBL] [Abstract][Full Text] [Related]  

  • 51. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S; Gardner PP; Krogh A
    Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Local RNA structure alignment with incomplete sequence.
    Kolbe DL; Eddy SR
    Bioinformatics; 2009 May; 25(10):1236-43. PubMed ID: 19304875
    [TBL] [Abstract][Full Text] [Related]  

  • 53. An algorithm for searching RNA motifs in genomic sequences.
    Liu J; Ma B; Zhang K
    Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Prediction of RNA secondary structure using generalized centroid estimators.
    Hamada M; Kiryu H; Sato K; Mituyama T; Asai K
    Bioinformatics; 2009 Feb; 25(4):465-73. PubMed ID: 19095700
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Pairwise RNA secondary structure alignment with conserved stem pattern.
    Chiu JK; Chen YP
    Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
    [TBL] [Abstract][Full Text] [Related]  

  • 57. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Evaluating the predictability of conformational switching in RNA.
    Voss B; Meyer C; Giegerich R
    Bioinformatics; 2004 Jul; 20(10):1573-82. PubMed ID: 14962925
    [TBL] [Abstract][Full Text] [Related]  

  • 59. RNA structural alignments, part I: Sankoff-based approaches for structural alignments.
    Havgaard JH; Gorodkin J
    Methods Mol Biol; 2014; 1097():275-90. PubMed ID: 24639164
    [TBL] [Abstract][Full Text] [Related]  

  • 60. The RNA Newton polytope and learnability of energy parameters.
    Forouzmand E; Chitsaz H
    Bioinformatics; 2013 Jul; 29(13):i300-7. PubMed ID: 23812998
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.