207 related articles for article (PubMed ID: 21791532)
1. Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.
Wang S; Peng J; Xu J
Bioinformatics; 2011 Sep; 27(18):2537-45. PubMed ID: 21791532
[TBL] [Abstract][Full Text] [Related]
2. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
3. Calculating and scoring high quality multiple flexible protein structure alignments.
Ritchie DW
Bioinformatics; 2016 Sep; 32(17):2650-8. PubMed ID: 27187202
[TBL] [Abstract][Full Text] [Related]
4. mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
Dong R; Peng Z; Zhang Y; Yang J
Bioinformatics; 2018 May; 34(10):1719-1725. PubMed ID: 29281009
[TBL] [Abstract][Full Text] [Related]
5. UniAlign: protein structure alignment meets evolution.
Zhao C; Sacan A
Bioinformatics; 2015 Oct; 31(19):3139-46. PubMed ID: 26059715
[TBL] [Abstract][Full Text] [Related]
6. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
7. Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points.
Leimeister CA; Dencker T; Morgenstern B
Bioinformatics; 2019 Jan; 35(2):211-218. PubMed ID: 29992260
[TBL] [Abstract][Full Text] [Related]
8. ModuleAlign: module-based global alignment of protein-protein interaction networks.
Hashemifar S; Ma J; Naveed H; Canzar S; Xu J
Bioinformatics; 2016 Sep; 32(17):i658-i664. PubMed ID: 27587686
[TBL] [Abstract][Full Text] [Related]
9. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
Teichert F; Minning J; Bastolla U; Porto M
BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
[TBL] [Abstract][Full Text] [Related]
10. A new progressive-iterative algorithm for multiple structure alignment.
Lupyan D; Leo-Macias A; Ortiz AR
Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
[TBL] [Abstract][Full Text] [Related]
11. Protein threading using context-specific alignment potential.
Ma J; Wang S; Zhao F; Xu J
Bioinformatics; 2013 Jul; 29(13):i257-65. PubMed ID: 23812991
[TBL] [Abstract][Full Text] [Related]
12. Multiple sequence alignment using partial order graphs.
Lee C; Grasso C; Sharlow MF
Bioinformatics; 2002 Mar; 18(3):452-64. PubMed ID: 11934745
[TBL] [Abstract][Full Text] [Related]
13. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
Wright ES
BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311
[TBL] [Abstract][Full Text] [Related]
14. MUSTANG: a multiple structural alignment algorithm.
Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
[TBL] [Abstract][Full Text] [Related]
15. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
Yamada S; Gotoh O; Yamana H
BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
[TBL] [Abstract][Full Text] [Related]
16. Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.
Neuwald AF
Bioinformatics; 2009 Aug; 25(15):1869-75. PubMed ID: 19505947
[TBL] [Abstract][Full Text] [Related]
17. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
18. PROMALS3D: a tool for multiple protein sequence and structure alignments.
Pei J; Kim BH; Grishin NV
Nucleic Acids Res; 2008 Apr; 36(7):2295-300. PubMed ID: 18287115
[TBL] [Abstract][Full Text] [Related]
19. Refinement by shifting secondary structure elements improves sequence alignments.
Tong J; Pei J; Otwinowski Z; Grishin NV
Proteins; 2015 Mar; 83(3):411-27. PubMed ID: 25546158
[TBL] [Abstract][Full Text] [Related]
20. NdPASA: a pairwise sequence alignment server for distantly related proteins.
Li W; Wang J; Feng JA
Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
