231 related articles for article (PubMed ID: 21799937)
1. sTarPicker: a method for efficient prediction of bacterial sRNA targets based on a two-step model for hybridization.
Ying X; Cao Y; Wu J; Liu Q; Cha L; Li W
PLoS One; 2011; 6(7):e22705. PubMed ID: 21799937
[TBL] [Abstract][Full Text] [Related]
2. sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs.
King AM; Vanderpool CK; Degnan PH
mSphere; 2019 Jan; 4(1):. PubMed ID: 30700509
[TBL] [Abstract][Full Text] [Related]
3. sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria.
Wang J; Liu T; Zhao B; Lu Q; Wang Z; Cao Y; Li W
Nucleic Acids Res; 2016 Jan; 44(D1):D248-53. PubMed ID: 26503244
[TBL] [Abstract][Full Text] [Related]
4. PresRAT: a server for identification of bacterial small-RNA sequences and their targets with probable binding region.
Kumar K; Chakraborty A; Chakrabarti S
RNA Biol; 2021 Aug; 18(8):1152-1159. PubMed ID: 33103602
[TBL] [Abstract][Full Text] [Related]
5. The Phosphorolytic Exoribonucleases Polynucleotide Phosphorylase and RNase PH Stabilize sRNAs and Facilitate Regulation of Their mRNA Targets.
Cameron TA; De Lay NR
J Bacteriol; 2016 Dec; 198(24):3309-3317. PubMed ID: 27698082
[TBL] [Abstract][Full Text] [Related]
6. Predicting sRNAs and their targets in bacteria.
Li W; Ying X; Lu Q; Chen L
Genomics Proteomics Bioinformatics; 2012 Oct; 10(5):276-84. PubMed ID: 23200137
[TBL] [Abstract][Full Text] [Related]
7. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.
Busch A; Richter AS; Backofen R
Bioinformatics; 2008 Dec; 24(24):2849-56. PubMed ID: 18940824
[TBL] [Abstract][Full Text] [Related]
8. A Modular Genetic System for High-Throughput Profiling and Engineering of Multi-Target Small RNAs.
Stimple SD; Lahiry A; Taris JE; Wood DW; Lease RA
Methods Mol Biol; 2018; 1737():373-391. PubMed ID: 29484604
[TBL] [Abstract][Full Text] [Related]
9. Accessibility and conservation: general features of bacterial small RNA-mRNA interactions?
Richter AS; Backofen R
RNA Biol; 2012 Jul; 9(7):954-65. PubMed ID: 22767260
[TBL] [Abstract][Full Text] [Related]
10. Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation.
Iosub IA; van Nues RW; McKellar SW; Nieken KJ; Marchioretto M; Sy B; Tree JJ; Viero G; Granneman S
Elife; 2020 May; 9():. PubMed ID: 32356726
[TBL] [Abstract][Full Text] [Related]
11. The sibling sRNAs NgncR_162 and NgncR_163 of Neisseria gonorrhoeae participate in the expression control of metabolic, transport and regulatory proteins.
Bauer S; Helmreich J; Zachary M; Kaethner M; Heinrichs E; Rudel T; Beier D
Microbiology (Reading); 2017 Nov; 163(11):1720-1734. PubMed ID: 29058643
[TBL] [Abstract][Full Text] [Related]
12. Identification of bacterial sRNA regulatory targets using ribosome profiling.
Wang J; Rennie W; Liu C; Carmack CS; Prévost K; Caron MP; Massé E; Ding Y; Wade JT
Nucleic Acids Res; 2015 Dec; 43(21):10308-20. PubMed ID: 26546513
[TBL] [Abstract][Full Text] [Related]
13. TargetRNA2: identifying targets of small regulatory RNAs in bacteria.
Kery MB; Feldman M; Livny J; Tjaden B
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W124-9. PubMed ID: 24753424
[TBL] [Abstract][Full Text] [Related]
14. New insights into small RNA-dependent translational regulation in prokaryotes.
Desnoyers G; Bouchard MP; Massé E
Trends Genet; 2013 Feb; 29(2):92-8. PubMed ID: 23141721
[TBL] [Abstract][Full Text] [Related]
15. sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction.
Naskulwar K; Peña-Castillo L
RNA Biol; 2022; 19(1):44-54. PubMed ID: 34965197
[TBL] [Abstract][Full Text] [Related]
16. Comparative genomics boosts target prediction for bacterial small RNAs.
Wright PR; Richter AS; Papenfort K; Mann M; Vogel J; Hess WR; Backofen R; Georg J
Proc Natl Acad Sci U S A; 2013 Sep; 110(37):E3487-96. PubMed ID: 23980183
[TBL] [Abstract][Full Text] [Related]
17. Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus.
Fröhlich KS; Förstner KU; Gitai Z
Nucleic Acids Res; 2018 Nov; 46(20):10969-10982. PubMed ID: 30165530
[TBL] [Abstract][Full Text] [Related]
18. Mutational Analysis of sRNA-mRNA Base Pairing by Electrophoretic Mobility Shift Assay.
Lillebæk EMS; Kallipolitis BH
Methods Mol Biol; 2018; 1737():165-176. PubMed ID: 29484593
[TBL] [Abstract][Full Text] [Related]
19. sRNATarBase: a comprehensive database of bacterial sRNA targets verified by experiments.
Cao Y; Wu J; Liu Q; Zhao Y; Ying X; Cha L; Wang L; Li W
RNA; 2010 Nov; 16(11):2051-7. PubMed ID: 20843985
[TBL] [Abstract][Full Text] [Related]
20. Small RNA gene identification and mRNA target predictions in bacteria.
Pichon C; Felden B
Bioinformatics; 2008 Dec; 24(24):2807-13. PubMed ID: 18974076
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]