These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 21807453)

  • 21. Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency.
    Hafner J; Zheng W
    J Chem Phys; 2009 May; 130(19):194111. PubMed ID: 19466825
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Predicting large-scale conformational changes in proteins using energy-weighted normal modes.
    Palmer DS; Jensen F
    Proteins; 2011 Oct; 79(10):2778-93. PubMed ID: 21905106
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A normal mode-based geometric simulation approach for exploring biologically relevant conformational transitions in proteins.
    Ahmed A; Rippmann F; Barnickel G; Gohlke H
    J Chem Inf Model; 2011 Jul; 51(7):1604-22. PubMed ID: 21639141
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.
    Tama F; Miyashita O; Brooks CL
    J Mol Biol; 2004 Apr; 337(4):985-99. PubMed ID: 15033365
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Dynamic linear response theory for conformational relaxation of proteins.
    Essiz SG; Coalson RD
    J Phys Chem B; 2009 Aug; 113(31):10859-69. PubMed ID: 19606824
    [TBL] [Abstract][Full Text] [Related]  

  • 26. An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins.
    Kirillova S; Cortés J; Stefaniu A; Siméon T
    Proteins; 2008 Jan; 70(1):131-43. PubMed ID: 17640073
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Ligand-induced conformational change of lipoprotein(a).
    Fless GM; Furbee J; Snyder ML; Meredith SC
    Biochemistry; 1996 Feb; 35(7):2289-98. PubMed ID: 8652569
    [TBL] [Abstract][Full Text] [Related]  

  • 28. SuperStar: improved knowledge-based interaction fields for protein binding sites.
    Verdonk ML; Cole JC; Watson P; Gillet V; Willett P
    J Mol Biol; 2001 Mar; 307(3):841-59. PubMed ID: 11273705
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prediction of the receptor conformation for iGluR2 agonist binding: QM/MM docking to an extensive conformational ensemble generated using normal mode analysis.
    Sander T; Liljefors T; Balle T
    J Mol Graph Model; 2008 Jun; 26(8):1259-68. PubMed ID: 18203639
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Conformational selection of protein kinase A revealed by flexible-ligand flexible-protein docking.
    Huang Z; Wong CF
    J Comput Chem; 2009 Mar; 30(4):631-44. PubMed ID: 18711718
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Self-association and ligand-induced conformational changes of iron regulatory proteins 1 and 2.
    Yikilmaz E; Rouault TA; Schuck P
    Biochemistry; 2005 Jun; 44(23):8470-8. PubMed ID: 15938636
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Representing receptor flexibility in ligand docking through relevant normal modes.
    Cavasotto CN; Kovacs JA; Abagyan RA
    J Am Chem Soc; 2005 Jul; 127(26):9632-40. PubMed ID: 15984891
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Flexibility of metal binding sites in proteins on a database scale.
    Babor M; Greenblatt HM; Edelman M; Sobolev V
    Proteins; 2005 May; 59(2):221-30. PubMed ID: 15726624
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis.
    Weikl TR; von Deuster C
    Proteins; 2009 Apr; 75(1):104-10. PubMed ID: 18798570
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Effective handling of induced-fit motion in flexible docking.
    Mizutani MY; Takamatsu Y; Ichinose T; Nakamura K; Itai A
    Proteins; 2006 Jun; 63(4):878-91. PubMed ID: 16532451
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Activation of the ghrelin receptor is described by a privileged collective motion: a model for constitutive and agonist-induced activation of a sub-class A G-protein coupled receptor (GPCR).
    Floquet N; M'Kadmi C; Perahia D; Gagne D; Bergé G; Marie J; Banères JL; Galleyrand JC; Fehrentz JA; Martinez J
    J Mol Biol; 2010 Jan; 395(4):769-84. PubMed ID: 19782690
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Development and validation of a genetic algorithm for flexible docking.
    Jones G; Willett P; Glen RC; Leach AR; Taylor R
    J Mol Biol; 1997 Apr; 267(3):727-48. PubMed ID: 9126849
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A novel computational analysis of ligand-induced conformational changes in the ATP binding sites of cyclin dependent kinases.
    Subramanian J; Sharma S; B-Rao C
    J Med Chem; 2006 Sep; 49(18):5434-41. PubMed ID: 16942017
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Automated prediction of ligand-binding sites in proteins.
    Harris R; Olson AJ; Goodsell DS
    Proteins; 2008 Mar; 70(4):1506-17. PubMed ID: 17910060
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.