BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

729 related articles for article (PubMed ID: 21828081)

  • 1. Guided tree topology proposals for Bayesian phylogenetic inference.
    Höhna S; Drummond AJ
    Syst Biol; 2012 Jan; 61(1):1-11. PubMed ID: 21828081
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Searching for convergence in phylogenetic Markov chain Monte Carlo.
    Beiko RG; Keith JM; Harlow TJ; Ragan MA
    Syst Biol; 2006 Aug; 55(4):553-65. PubMed ID: 16857650
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Polytomies and Bayesian phylogenetic inference.
    Lewis PO; Holder MT; Holsinger KE
    Syst Biol; 2005 Apr; 54(2):241-53. PubMed ID: 16012095
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees.
    Aberer AJ; Stamatakis A; Ronquist F
    Syst Biol; 2016 Jan; 65(1):161-76. PubMed ID: 26231183
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phylogenetic MCMC algorithms are misleading on mixtures of trees.
    Mossel E; Vigoda E
    Science; 2005 Sep; 309(5744):2207-9. PubMed ID: 16195459
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference.
    Miller RE; Buckley TR; Manos PS
    Syst Biol; 2002 Oct; 51(5):740-53. PubMed ID: 12396588
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference.
    Zhang C; Huelsenbeck JP; Ronquist F
    Syst Biol; 2020 Sep; 69(5):1016-1032. PubMed ID: 31985810
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Adaptive Tree Proposals for Bayesian Phylogenetic Inference.
    Meyer X
    Syst Biol; 2021 Aug; 70(5):1015-1032. PubMed ID: 33515248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifiability of parameters in MCMC Bayesian inference of phylogeny.
    Rannala B
    Syst Biol; 2002 Oct; 51(5):754-60. PubMed ID: 12396589
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantifying MCMC exploration of phylogenetic tree space.
    Whidden C; Matsen FA
    Syst Biol; 2015 May; 64(3):472-91. PubMed ID: 25631175
    [TBL] [Abstract][Full Text] [Related]  

  • 11. When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates.
    Brown JM; Hedtke SM; Lemmon AR; Lemmon EM
    Syst Biol; 2010 Mar; 59(2):145-61. PubMed ID: 20525627
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Joint Bayesian estimation of alignment and phylogeny.
    Redelings BD; Suchard MA
    Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A gradient Markov chain Monte Carlo algorithm for computing multivariate maximum likelihood estimates and posterior distributions: mixture dose-response assessment.
    Li R; Englehardt JD; Li X
    Risk Anal; 2012 Feb; 32(2):345-59. PubMed ID: 21906114
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.
    Nylander JA; Wilgenbusch JC; Warren DL; Swofford DL
    Bioinformatics; 2008 Feb; 24(4):581-3. PubMed ID: 17766271
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Sampling phylogenetic tree space with the generalized Gibbs sampler.
    Keith JM; Adams P; Ragan MA; Bryant D
    Mol Phylogenet Evol; 2005 Mar; 34(3):459-68. PubMed ID: 15683921
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Efficiency of alternative MCMC strategies illustrated using the reaction norm model.
    Shariati M; Sorensen D
    J Anim Breed Genet; 2008 Jun; 125(3):176-86. PubMed ID: 18479268
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Branch-length prior influences Bayesian posterior probability of phylogeny.
    Yang Z; Rannala B
    Syst Biol; 2005 Jun; 54(3):455-70. PubMed ID: 16012111
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessing the convergence of Markov Chain Monte Carlo methods: an example from evaluation of diagnostic tests in absence of a gold standard.
    Toft N; Innocent GT; Gettinby G; Reid SW
    Prev Vet Med; 2007 May; 79(2-4):244-56. PubMed ID: 17292499
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RWTY (R We There Yet): An R Package for Examining Convergence of Bayesian Phylogenetic Analyses.
    Warren DL; Geneva AJ; Lanfear R
    Mol Biol Evol; 2017 Apr; 34(4):1016-1020. PubMed ID: 28087773
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
    Waddell PJ; Kishino H; Ota R
    Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 37.