These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

468 related articles for article (PubMed ID: 21828086)

  • 1. Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.
    Sathirapongsasuti JF; Lee H; Horst BA; Brunner G; Cochran AJ; Binder S; Quackenbush J; Nelson SF
    Bioinformatics; 2011 Oct; 27(19):2648-54. PubMed ID: 21828086
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
    Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
    Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Inferring copy number and genotype in tumour exome data.
    Amarasinghe KC; Li J; Hunter SM; Ryland GL; Cowin PA; Campbell IG; Halgamuge SK
    BMC Genomics; 2014 Aug; 15(1):732. PubMed ID: 25167919
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exome sequence read depth methods for identifying copy number changes.
    Kadalayil L; Rafiq S; Rose-Zerilli MJ; Pengelly RJ; Parker H; Oscier D; Strefford JC; Tapper WJ; Gibson J; Ennis S; Collins A
    Brief Bioinform; 2015 May; 16(3):380-92. PubMed ID: 25169955
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing the reproducibility of exome copy number variations predictions.
    Hong CS; Singh LN; Mullikin JC; Biesecker LG
    Genome Med; 2016 Aug; 8(1):82. PubMed ID: 27503473
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Utilization of Whole-Exome Next-Generation Sequencing Variant Read Frequency for Detection of Lesion-Specific, Somatic Loss of Heterozygosity in a Neurofibromatosis Type 1 Cohort with Tibial Pseudarthrosis.
    Margraf RL; VanSant-Webb C; Sant D; Carey J; Hanson H; D'Astous J; Viskochil D; Stevenson DA; Mao R
    J Mol Diagn; 2017 May; 19(3):468-474. PubMed ID: 28433079
    [TBL] [Abstract][Full Text] [Related]  

  • 7. cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data.
    Bellos E; Coin LJ
    Bioinformatics; 2014 Sep; 30(17):i639-45. PubMed ID: 25161258
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genome-Wide Copy Number Variation Detection Using NGS: Data Analysis and Interpretation.
    Shen W; Szankasi P; Durtschi J; Kelley TW; Xu X
    Methods Mol Biol; 2019; 1908():113-124. PubMed ID: 30649724
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
    Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
    BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data.
    Bao L; Pu M; Messer K
    Bioinformatics; 2014 Apr; 30(8):1056-1063. PubMed ID: 24389661
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A regression model for estimating DNA copy number applied to capture sequencing data.
    Rigaill GJ; Cadot S; Kluin RJ; Xue Z; Bernards R; Majewski IJ; Wessels LF
    Bioinformatics; 2012 Sep; 28(18):2357-65. PubMed ID: 22796958
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data.
    Forni D; Martin D; Abujaber R; Sharp AJ; Sironi M; Hollox EJ
    BMC Genomics; 2015 Nov; 16():891. PubMed ID: 26526070
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data.
    Packer JS; Maxwell EK; O'Dushlaine C; Lopez AE; Dewey FE; Chernomorsky R; Baras A; Overton JD; Habegger L; Reid JG
    Bioinformatics; 2016 Jan; 32(1):133-5. PubMed ID: 26382196
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Free-access copy-number variant detection tools for targeted next-generation sequencing data.
    Roca I; González-Castro L; Fernández H; Couce ML; Fernández-Marmiesse A
    Mutat Res Rev Mutat Res; 2019; 779():114-125. PubMed ID: 31097148
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CNV-guided multi-read allocation for ChIP-seq.
    Zhang Q; Keleş S
    Bioinformatics; 2014 Oct; 30(20):2860-7. PubMed ID: 24966364
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome.
    Masood D; Ren L; Nguyen C; Brundu FG; Zheng L; Zhao Y; Jaeger E; Li Y; Cha SW; Halpern A; Truong S; Virata M; Yan C; Chen Q; Pang A; Alberto R; Xiao C; Yang Z; Chen W; Wang C; Cross F; Catreux S; Shi L; Beaver JA; Xiao W; Meerzaman DM
    Genome Biol; 2024 Jun; 25(1):163. PubMed ID: 38902799
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing.
    Shen R; Seshan VE
    Nucleic Acids Res; 2016 Sep; 44(16):e131. PubMed ID: 27270079
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identifying Human Genome-Wide CNV, LOH and UPD by Targeted Sequencing of Selected Regions.
    Li W; Xia Y; Wang C; Tang YT; Guo W; Li J; Zhao X; Sun Y; Hu J; Zhen H; Zhang X; Chen C; Shi Y; Li L; Cao H; Du H; Li J
    PLoS One; 2014; 10(4):e0123081. PubMed ID: 25919136
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.
    Wang W; Wang W; Sun W; Crowley JJ; Szatkiewicz JP
    Nucleic Acids Res; 2015 Aug; 43(14):e90. PubMed ID: 25883151
    [TBL] [Abstract][Full Text] [Related]  

  • 20. modSaRa: a computationally efficient R package for CNV identification.
    Xiao F; Niu Y; Hao N; Xu Y; Jin Z; Zhang H
    Bioinformatics; 2017 Aug; 33(15):2384-2385. PubMed ID: 28453611
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.