300 related articles for article (PubMed ID: 21829340)
1. From structure prediction to genomic screens for novel non-coding RNAs.
Gorodkin J; Hofacker IL
PLoS Comput Biol; 2011 Aug; 7(8):e1002100. PubMed ID: 21829340
[TBL] [Abstract][Full Text] [Related]
2. Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
Uzilov AV; Keegan JM; Mathews DH
BMC Bioinformatics; 2006 Mar; 7():173. PubMed ID: 16566836
[TBL] [Abstract][Full Text] [Related]
3. Computational methods in noncoding RNA research.
Machado-Lima A; del Portillo HA; Durham AM
J Math Biol; 2008 Jan; 56(1-2):15-49. PubMed ID: 17786447
[TBL] [Abstract][Full Text] [Related]
4. Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.
Steigele S; Huber W; Stocsits C; Stadler PF; Nieselt K
BMC Biol; 2007 Jun; 5():25. PubMed ID: 17577407
[TBL] [Abstract][Full Text] [Related]
5. De novo discovery of structured ncRNA motifs in genomic sequences.
Ruzzo WL; Gorodkin J
Methods Mol Biol; 2014; 1097():303-18. PubMed ID: 24639166
[TBL] [Abstract][Full Text] [Related]
6. RNAdetect: efficient computational detection of novel non-coding RNAs.
Chen CC; Qian X; Yoon BJ
Bioinformatics; 2019 Apr; 35(7):1133-1141. PubMed ID: 30169792
[TBL] [Abstract][Full Text] [Related]
7. Biocomputational prediction of non-coding RNAs in model cyanobacteria.
Voss B; Georg J; Schön V; Ude S; Hess WR
BMC Genomics; 2009 Mar; 10():123. PubMed ID: 19309518
[TBL] [Abstract][Full Text] [Related]
8. Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.
Wang Y; Manzour A; Shareghi P; Shaw TI; Li YW; Malmberg RL; Cai L
BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S1. PubMed ID: 22537005
[TBL] [Abstract][Full Text] [Related]
9. Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots.
Kato Y; Gorodkin J; Havgaard JH
BMC Genomics; 2017 Dec; 18(1):935. PubMed ID: 29197323
[TBL] [Abstract][Full Text] [Related]
10. Identification of cyanobacterial non-coding RNAs by comparative genome analysis.
Axmann IM; Kensche P; Vogel J; Kohl S; Herzel H; Hess WR
Genome Biol; 2005; 6(9):R73. PubMed ID: 16168080
[TBL] [Abstract][Full Text] [Related]
11. Structure-based whole-genome realignment reveals many novel noncoding RNAs.
Will S; Yu M; Berger B
Genome Res; 2013 Jun; 23(6):1018-27. PubMed ID: 23296921
[TBL] [Abstract][Full Text] [Related]
12. Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.
Qu G; Kruszka K; Plewka P; Yang SY; Chiou TJ; Jarmolowski A; Szweykowska-Kulinska Z; Echeverria M; Karlowski WM
BMC Genomics; 2015 Nov; 16():1009. PubMed ID: 26607788
[TBL] [Abstract][Full Text] [Related]
13. Plant noncoding RNA gene discovery by "single-genome comparative genomics".
Chen CJ; Zhou H; Chen YQ; Qu LH; Gautheret D
RNA; 2011 Mar; 17(3):390-400. PubMed ID: 21220549
[TBL] [Abstract][Full Text] [Related]
14. Sequence and structure analysis of noncoding RNAs.
Washietl S
Methods Mol Biol; 2010; 609():285-306. PubMed ID: 20221926
[TBL] [Abstract][Full Text] [Related]
15. Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures.
Fu Y; Xu ZZ; Lu ZJ; Zhao S; Mathews DH
PLoS One; 2015; 10(6):e0130200. PubMed ID: 26075601
[TBL] [Abstract][Full Text] [Related]
16. Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database.
Naghdi MR; Smail K; Wang JX; Wade F; Breaker RR; Perreault J
Methods; 2017 Mar; 117():3-13. PubMed ID: 28279853
[TBL] [Abstract][Full Text] [Related]
17. Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
Washietl S; Hofacker IL
J Mol Biol; 2004 Sep; 342(1):19-30. PubMed ID: 15313604
[TBL] [Abstract][Full Text] [Related]
18. Progress and Current Challenges in Modeling Large RNAs.
Somarowthu S
J Mol Biol; 2016 Feb; 428(5 Pt A):736-747. PubMed ID: 26585404
[TBL] [Abstract][Full Text] [Related]
19. Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm.
Lei J; Techa-Angkoon P; Sun Y
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(2):274-85. PubMed ID: 23929857
[TBL] [Abstract][Full Text] [Related]
20. Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence.
Shaw TI; Manzour A; Wang Y; Malmberg RL; Cai L
J Bioinform Comput Biol; 2011 Apr; 9(2):283-98. PubMed ID: 21523933
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
