These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

300 related articles for article (PubMed ID: 21829340)

  • 21. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
    Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
    Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Concepts and introduction to RNA bioinformatics.
    Gorodkin J; Hofacker IL; Ruzzo WL
    Methods Mol Biol; 2014; 1097():1-31. PubMed ID: 24639152
    [TBL] [Abstract][Full Text] [Related]  

  • 23. In Silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula.
    Wen J; Parker BJ; Weiller GF
    In Silico Biol; 2007; 7(4-5):485-505. PubMed ID: 18391239
    [TBL] [Abstract][Full Text] [Related]  

  • 24. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
    Harmanci AO; Sharma G; Mathews DH
    BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
    [TBL] [Abstract][Full Text] [Related]  

  • 25. De novo prediction of structured RNAs from genomic sequences.
    Gorodkin J; Hofacker IL; Torarinsson E; Yao Z; Havgaard JH; Ruzzo WL
    Trends Biotechnol; 2010 Jan; 28(1):9-19. PubMed ID: 19942311
    [TBL] [Abstract][Full Text] [Related]  

  • 26. GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.
    Miladi M; Sokhoyan E; Houwaart T; Heyne S; Costa F; Grüning B; Backofen R
    Gigascience; 2019 Dec; 8(12):. PubMed ID: 31808801
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Computational prediction of novel non-coding RNAs in Arabidopsis thaliana.
    Song D; Yang Y; Yu B; Zheng B; Deng Z; Lu BL; Chen X; Jiang T
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S36. PubMed ID: 19208137
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Robust and accurate prediction of noncoding RNAs from aligned sequences.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S3. PubMed ID: 21106125
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Designing secondary structure profiles for fast ncRNA identification.
    Sun Y; Buhler J
    Comput Syst Bioinformatics Conf; 2008; 7():145-56. PubMed ID: 19642276
    [TBL] [Abstract][Full Text] [Related]  

  • 31. LocARNA-P: accurate boundary prediction and improved detection of structural RNAs.
    Will S; Joshi T; Hofacker IL; Stadler PF; Backofen R
    RNA; 2012 May; 18(5):900-14. PubMed ID: 22450757
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Non-coding RNA genes and the modern RNA world.
    Eddy SR
    Nat Rev Genet; 2001 Dec; 2(12):919-29. PubMed ID: 11733745
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Searching for non-coding RNAs in genomic sequences using ncRNAscout.
    Bao M; Cervantes Cervantes M; Zhong L; Wang JT
    Genomics Proteomics Bioinformatics; 2012 Apr; 10(2):114-21. PubMed ID: 22768985
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools.
    Tieng FYF; Abdullah-Zawawi MR; Md Shahri NAA; Mohamed-Hussein ZA; Lee LH; Mutalib NA
    Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38040490
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics.
    McCutcheon JP; Eddy SR
    Nucleic Acids Res; 2003 Jul; 31(14):4119-28. PubMed ID: 12853629
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Computational analysis of noncoding RNAs.
    Washietl S; Will S; Hendrix DA; Goff LA; Rinn JL; Berger B; Kellis M
    Wiley Interdiscip Rev RNA; 2012; 3(6):759-78. PubMed ID: 22991327
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.
    Pánek J; Krásny L; Bobek J; Jezková E; Korelusová J; Vohradsky J
    Nucleic Acids Res; 2011 Apr; 39(8):3418-26. PubMed ID: 21193488
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Thermodynamic and kinetic folding of riboswitches.
    Badelt S; Hammer S; Flamm C; Hofacker IL
    Methods Enzymol; 2015; 553():193-213. PubMed ID: 25726466
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.
    Soldà G; Makunin IV; Sezerman OU; Corradin A; Corti G; Guffanti A
    Brief Bioinform; 2009 Sep; 10(5):475-89. PubMed ID: 19383843
    [TBL] [Abstract][Full Text] [Related]  

  • 40. De novo computational prediction of non-coding RNA genes in prokaryotic genomes.
    Tran TT; Zhou F; Marshburn S; Stead M; Kushner SR; Xu Y
    Bioinformatics; 2009 Nov; 25(22):2897-905. PubMed ID: 19744996
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 15.