These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
79 related articles for article (PubMed ID: 21844636)
21. Mash: fast genome and metagenome distance estimation using MinHash. Ondov BD; Treangen TJ; Melsted P; Mallonee AB; Bergman NH; Koren S; Phillippy AM Genome Biol; 2016 Jun; 17(1):132. PubMed ID: 27323842 [TBL] [Abstract][Full Text] [Related]
22. Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level. Jing G; Zhang Y; Yang M; Liu L; Xu J; Su X Bioinformatics; 2020 Apr; 36(7):2308-2310. PubMed ID: 31793979 [TBL] [Abstract][Full Text] [Related]
23. Mixture models for analysis of the taxonomic composition of metagenomes. Meinicke P; Asshauer KP; Lingner T Bioinformatics; 2011 Jun; 27(12):1618-24. PubMed ID: 21546400 [TBL] [Abstract][Full Text] [Related]
24. Beyond the bounds of orthology: functional inference from metagenomic context. Vey G; Moreno-Hagelsieb G Mol Biosyst; 2010 Jul; 6(7):1247-54. PubMed ID: 20419183 [TBL] [Abstract][Full Text] [Related]
25. Metagenomic analysis of intestinal microbiomes in chickens. Kim T; Mundt E Methods Mol Biol; 2011; 733():185-94. PubMed ID: 21431771 [TBL] [Abstract][Full Text] [Related]
26. Phy-PMRFI: Phylogeny-Aware Prediction of Metagenomic Functions Using Random Forest Feature Importance. Wassan JT; Wang H; Browne F; Zheng H IEEE Trans Nanobioscience; 2019 Jul; 18(3):273-282. PubMed ID: 31021803 [TBL] [Abstract][Full Text] [Related]
27. Exploration of noncoding sequences in metagenomes. Tobar-Tosse F; Rodríguez AC; Vélez PE; Zambrano MM; Moreno PA PLoS One; 2013; 8(3):e59488. PubMed ID: 23536879 [TBL] [Abstract][Full Text] [Related]
28. FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples. Lee J; Lee HT; Hong WY; Jang E; Kim J J Microbiol Methods; 2015 Aug; 115():121-8. PubMed ID: 26027543 [TBL] [Abstract][Full Text] [Related]
29. Fast Metagenomic Binning via Hashing and Bayesian Clustering. Popic V; Kuleshov V; Snyder M; Batzoglou S J Comput Biol; 2018 Jul; 25(7):677-688. PubMed ID: 29658784 [TBL] [Abstract][Full Text] [Related]
30. A most wanted list of conserved microbial protein families with no known domains. Wyman SK; Avila-Herrera A; Nayfach S; Pollard KS PLoS One; 2018; 13(10):e0205749. PubMed ID: 30332487 [TBL] [Abstract][Full Text] [Related]
32. Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities. Seifert J; Herbst FA; Halkjaer Nielsen P; Planes FJ; Jehmlich N; Ferrer M; von Bergen M Proteomics; 2013 Oct; 13(18-19):2786-804. PubMed ID: 23625762 [TBL] [Abstract][Full Text] [Related]
33. Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics. Jonsson V; Österlund T; Nerman O; Kristiansson E BMC Genomics; 2016 Jan; 17():78. PubMed ID: 26810311 [TBL] [Abstract][Full Text] [Related]
34. Sequence-based Functional Metagenomics Reveals Novel Natural Diversity of Functional CopA in Environmental Microbiomes. Li W; Wang L; Li X; Zheng X; Cohen MF; Liu YX Genomics Proteomics Bioinformatics; 2023 Dec; 21(6):1182-1194. PubMed ID: 36089219 [TBL] [Abstract][Full Text] [Related]
39. Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree. Qiu YQ; Tian X; Zhang S IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):1112-22. PubMed ID: 26451823 [TBL] [Abstract][Full Text] [Related]
40. Motif-Based Text Mining of Microbial Metagenome Redundancy Profiling Data for Disease Classification. Wang Y; Li R; Zhou Y; Ling Z; Guo X; Xie L; Liu L Biomed Res Int; 2016; 2016():6598307. PubMed ID: 27057545 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]