480 related articles for article (PubMed ID: 21845272)
1. Influence of water-protein hydrogen bonding on the stability of Trp-cage miniprotein. A comparison between the TIP3P and TIP4P-Ew water models.
Paschek D; Day R; García AE
Phys Chem Chem Phys; 2011 Nov; 13(44):19840-7. PubMed ID: 21845272
[TBL] [Abstract][Full Text] [Related]
2. Protonation/deprotonation effects on the stability of the Trp-cage miniprotein.
Jimenez-Cruz CA; Makhatadze GI; Garcia AE
Phys Chem Chem Phys; 2011 Oct; 13(38):17056-63. PubMed ID: 21773639
[TBL] [Abstract][Full Text] [Related]
3. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
Paschek D; Nymeyer H; García AE
J Struct Biol; 2007 Mar; 157(3):524-33. PubMed ID: 17293125
[TBL] [Abstract][Full Text] [Related]
4. Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse.
Best RB; Mittal J
J Phys Chem B; 2010 Nov; 114(46):14916-23. PubMed ID: 21038907
[TBL] [Abstract][Full Text] [Related]
5. Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations.
Kannan S; Zacharias M
Proteins; 2009 Aug; 76(2):448-60. PubMed ID: 19173315
[TBL] [Abstract][Full Text] [Related]
6. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
Cao Z; Liu L; Wu P; Wang J
Acta Biochim Biophys Sin (Shanghai); 2011 Mar; 43(3):172-80. PubMed ID: 21289072
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water.
Alonso DO; Daggett V
J Mol Biol; 1995 Mar; 247(3):501-20. PubMed ID: 7714903
[TBL] [Abstract][Full Text] [Related]
8. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
Chebaro Y; Dong X; Laghaei R; Derreumaux P; Mousseau N
J Phys Chem B; 2009 Jan; 113(1):267-74. PubMed ID: 19067549
[TBL] [Abstract][Full Text] [Related]
9. Equilibrium study of protein denaturation by urea.
Canchi DR; Paschek D; García AE
J Am Chem Soc; 2010 Feb; 132(7):2338-44. PubMed ID: 20121105
[TBL] [Abstract][Full Text] [Related]
10. Folding dynamics of the Trp-cage miniprotein: evidence for a native-like intermediate from combined time-resolved vibrational spectroscopy and molecular dynamics simulations.
Meuzelaar H; Marino KA; Huerta-Viga A; Panman MR; Smeenk LE; Kettelarij AJ; van Maarseveen JH; Timmerman P; Bolhuis PG; Woutersen S
J Phys Chem B; 2013 Oct; 117(39):11490-501. PubMed ID: 24050152
[TBL] [Abstract][Full Text] [Related]
11. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
Griffiths-Jones SR; Maynard AJ; Searle MS
J Mol Biol; 1999 Oct; 292(5):1051-69. PubMed ID: 10512702
[TBL] [Abstract][Full Text] [Related]
12. Folding and unfolding thermodynamics of the TC10b Trp-cage miniprotein.
English CA; García AE
Phys Chem Chem Phys; 2014 Feb; 16(7):2748-57. PubMed ID: 24448113
[TBL] [Abstract][Full Text] [Related]
13. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
Zhou R
Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
[TBL] [Abstract][Full Text] [Related]
14. The equilibrium properties and folding kinetics of an all-atom Go model of the Trp-cage.
Linhananta A; Boer J; MacKay I
J Chem Phys; 2005 Mar; 122(11):114901. PubMed ID: 15836251
[TBL] [Abstract][Full Text] [Related]
15. Ab initio folding simulation of Trpcage by replica exchange with hybrid Hamiltonian.
Xu W; Mu Y
Biophys Chem; 2008 Oct; 137(2-3):116-25. PubMed ID: 18775599
[TBL] [Abstract][Full Text] [Related]
16. A Computational Study of the Ionic Liquid-Induced Destabilization of the Miniprotein Trp-Cage.
Uralcan B; Kim SB; Markwalter CE; Prud'homme RK; Debenedetti PG
J Phys Chem B; 2018 May; 122(21):5707-5715. PubMed ID: 29617131
[TBL] [Abstract][Full Text] [Related]
17. Unfolding thermodynamics of Trp-cage, a 20 residue miniprotein, studied by differential scanning calorimetry and circular dichroism spectroscopy.
Streicher WW; Makhatadze GI
Biochemistry; 2007 Mar; 46(10):2876-80. PubMed ID: 17295518
[TBL] [Abstract][Full Text] [Related]
18. A molecular dynamics study of the correlations between solvent-accessible surface, molecular volume, and folding state.
Floriano WB; Domont GB; Nascimento MA
J Phys Chem B; 2007 Feb; 111(7):1893-9. PubMed ID: 17261064
[TBL] [Abstract][Full Text] [Related]
19. Fluorescence probe of Trp-cage protein conformation in solution and in gas phase.
Iavarone AT; Patriksson A; van der Spoel D; Parks JH
J Am Chem Soc; 2007 May; 129(21):6726-35. PubMed ID: 17487969
[TBL] [Abstract][Full Text] [Related]
20. A calorimetric study of the folding-unfolding of an alpha-helix with covalently closed N and C-terminal loops.
Taylor JW; Greenfield NJ; Wu B; Privalov PL
J Mol Biol; 1999 Aug; 291(4):965-76. PubMed ID: 10452900
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
