575 related articles for article (PubMed ID: 21850044)
1. Understanding the transcriptome through RNA structure.
Wan Y; Kertesz M; Spitale RC; Segal E; Chang HY
Nat Rev Genet; 2011 Aug; 12(9):641-55. PubMed ID: 21850044
[TBL] [Abstract][Full Text] [Related]
2. Dawn of the in vivo RNA structurome and interactome.
Kwok CK
Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
[TBL] [Abstract][Full Text] [Related]
3. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
[TBL] [Abstract][Full Text] [Related]
4. Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sites.
Radecki P; Uppuluri R; Deshpande K; Aviran S
RNA Biol; 2021 Oct; 18(sup1):521-536. PubMed ID: 34606413
[TBL] [Abstract][Full Text] [Related]
5. Decoding the RNA structurome.
Lu Z; Chang HY
Curr Opin Struct Biol; 2016 Feb; 36():142-8. PubMed ID: 26923056
[TBL] [Abstract][Full Text] [Related]
6. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
7. Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS.
Chorostecki U; Willis JR; Saus E; Gabaldon T
Methods Mol Biol; 2021; 2284():51-62. PubMed ID: 33835437
[TBL] [Abstract][Full Text] [Related]
8. Toward a next-generation atlas of RNA secondary structure.
Bai Y; Dai X; Harrison A; Johnston C; Chen M
Brief Bioinform; 2016 Jan; 17(1):63-77. PubMed ID: 25922372
[TBL] [Abstract][Full Text] [Related]
9. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
10. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
Selega A; Sirocchi C; Iosub I; Granneman S; Sanguinetti G
Nat Methods; 2017 Jan; 14(1):83-89. PubMed ID: 27819660
[TBL] [Abstract][Full Text] [Related]
11. StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y; Bouvier E; Kwok CK; Ding Y; Nekrutenko A; Bevilacqua PC; Assmann SM
Bioinformatics; 2015 Aug; 31(16):2668-75. PubMed ID: 25886980
[TBL] [Abstract][Full Text] [Related]
12. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data.
Incarnato D; Neri F; Anselmi F; Oliviero S
Bioinformatics; 2016 Feb; 32(3):459-61. PubMed ID: 26487736
[TBL] [Abstract][Full Text] [Related]
13. Probing the dynamic RNA structurome and its functions.
Spitale RC; Incarnato D
Nat Rev Genet; 2023 Mar; 24(3):178-196. PubMed ID: 36348050
[TBL] [Abstract][Full Text] [Related]
14. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
Van Nostrand EL; Huelga SC; Yeo GW
Adv Exp Med Biol; 2016; 907():1-28. PubMed ID: 27256380
[TBL] [Abstract][Full Text] [Related]
15. Genome-Wide Approaches for RNA Structure Probing.
Silverman IM; Berkowitz ND; Gosai SJ; Gregory BD
Adv Exp Med Biol; 2016; 907():29-59. PubMed ID: 27256381
[TBL] [Abstract][Full Text] [Related]
16. High-throughput determination of RNA structures.
Strobel EJ; Yu AM; Lucks JB
Nat Rev Genet; 2018 Oct; 19(10):615-634. PubMed ID: 30054568
[TBL] [Abstract][Full Text] [Related]
17. Motif Discovery from CLIP Experiments.
Pietrosanto M; Ausiello G; Helmer-Citterich M
Methods Mol Biol; 2021; 2284():43-50. PubMed ID: 33835436
[TBL] [Abstract][Full Text] [Related]
18. Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain.
Seemann SE; Sunkin SM; Hawrylycz MJ; Ruzzo WL; Gorodkin J
BMC Genomics; 2012 May; 13():214. PubMed ID: 22651826
[TBL] [Abstract][Full Text] [Related]
19. Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing.
Milek M; Wyler E; Landthaler M
Semin Cell Dev Biol; 2012 Apr; 23(2):206-12. PubMed ID: 22212136
[TBL] [Abstract][Full Text] [Related]
20. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing.
Wan Y; Qu K; Ouyang Z; Chang HY
Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]