129 related articles for article (PubMed ID: 21860879)
1. Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks.
Michoel T; Joshi A; Nachtergaele B; Van de Peer Y
Mol Biosyst; 2011 Oct; 7(10):2769-78. PubMed ID: 21860879
[TBL] [Abstract][Full Text] [Related]
2. Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach.
Ma HW; Buer J; Zeng AP
BMC Bioinformatics; 2004 Dec; 5():199. PubMed ID: 15603590
[TBL] [Abstract][Full Text] [Related]
3. Bridge and brick network motifs: identifying significant building blocks from complex biological systems.
Huang CY; Cheng CY; Sun CT
Artif Intell Med; 2007 Oct; 41(2):117-27. PubMed ID: 17825540
[TBL] [Abstract][Full Text] [Related]
4. Architecture of basic building blocks in protein and domain structural interaction networks.
Moon HS; Bhak J; Lee KH; Lee D
Bioinformatics; 2005 Apr; 21(8):1479-86. PubMed ID: 15613386
[TBL] [Abstract][Full Text] [Related]
5. Mining bridge and brick motifs from complex biological networks for functionally and statistically significant discovery.
Cheng CY; Huang CY; Sun CT
IEEE Trans Syst Man Cybern B Cybern; 2008 Feb; 38(1):17-24. PubMed ID: 18270079
[TBL] [Abstract][Full Text] [Related]
6. Network motifs are enriched with transcription factors whose transcripts have short half-lives.
Wang E; Purisima E
Trends Genet; 2005 Sep; 21(9):492-5. PubMed ID: 16026891
[TBL] [Abstract][Full Text] [Related]
7. Evolutionary conservation of motif constituents in the yeast protein interaction network.
Wuchty S; Oltvai ZN; Barabási AL
Nat Genet; 2003 Oct; 35(2):176-9. PubMed ID: 12973352
[TBL] [Abstract][Full Text] [Related]
8. Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence.
Dwight Kuo P; Banzhaf W; Leier A
Biosystems; 2006 Sep; 85(3):177-200. PubMed ID: 16650928
[TBL] [Abstract][Full Text] [Related]
9. Functional and evolutionary inference in gene networks: does topology matter?
Siegal ML; Promislow DE; Bergman A
Genetica; 2007 Jan; 129(1):83-103. PubMed ID: 16897451
[TBL] [Abstract][Full Text] [Related]
10. Discovering functions and revealing mechanisms at molecular level from biological networks.
Zhang S; Jin G; Zhang XS; Chen L
Proteomics; 2007 Aug; 7(16):2856-69. PubMed ID: 17703505
[TBL] [Abstract][Full Text] [Related]
11. Network motifs in the transcriptional regulation network of Escherichia coli.
Shen-Orr SS; Milo R; Mangan S; Alon U
Nat Genet; 2002 May; 31(1):64-8. PubMed ID: 11967538
[TBL] [Abstract][Full Text] [Related]
12. A review on models and algorithms for motif discovery in protein-protein interaction networks.
Ciriello G; Guerra C
Brief Funct Genomic Proteomic; 2008 Mar; 7(2):147-56. PubMed ID: 18443014
[TBL] [Abstract][Full Text] [Related]
13. Comparative analysis of topological patterns in different mammalian networks.
Goemann B; Potapov AP; Ante M; Wingender E
Genome Inform; 2009 Oct; 23(1):32-45. PubMed ID: 20180260
[TBL] [Abstract][Full Text] [Related]
14. Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network.
Meshi O; Shlomi T; Ruppin E
BMC Syst Biol; 2007 Jan; 1():1. PubMed ID: 17408505
[TBL] [Abstract][Full Text] [Related]
15. Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network.
Dobrin R; Beg QK; Barabási AL; Oltvai ZN
BMC Bioinformatics; 2004 Jan; 5():10. PubMed ID: 15018656
[TBL] [Abstract][Full Text] [Related]
16. Protein-protein interactions: making sense of networks via graph-theoretic modeling.
Pržulj N
Bioessays; 2011 Feb; 33(2):115-23. PubMed ID: 21188720
[TBL] [Abstract][Full Text] [Related]
17. Do motifs reflect evolved function?--No convergent evolution of genetic regulatory network subgraph topologies.
Knabe JF; Nehaniv CL; Schilstra MJ
Biosystems; 2008; 94(1-2):68-74. PubMed ID: 18611431
[TBL] [Abstract][Full Text] [Related]
18. Emergence of modularity and disassortativity in protein-protein interaction networks.
Wan X; Cai S; Zhou J; Liu Z
Chaos; 2010 Dec; 20(4):045113. PubMed ID: 21198125
[TBL] [Abstract][Full Text] [Related]
19. Gene regulatory network growth by duplication.
Teichmann SA; Babu MM
Nat Genet; 2004 May; 36(5):492-6. PubMed ID: 15107850
[TBL] [Abstract][Full Text] [Related]
20. Ranking of network elements based on functional substructures.
Koschützki D; Schwöbbermeyer H; Schreiber F
J Theor Biol; 2007 Oct; 248(3):471-9. PubMed ID: 17644116
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]