BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 21886867)

  • 1. TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data.
    Lorenzi HA; Hoover J; Inman J; Safford T; Murphy S; Kagan L; Williamson SJ
    Stand Genomic Sci; 2011 Jul; 4(3):418-29. PubMed ID: 21886867
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.
    Tanenbaum DM; Goll J; Murphy S; Kumar P; Zafar N; Thiagarajan M; Madupu R; Davidsen T; Kagan L; Kravitz S; Rusch DB; Yooseph S
    Stand Genomic Sci; 2010 Mar; 2(2):229-37. PubMed ID: 21304707
    [TBL] [Abstract][Full Text] [Related]  

  • 3. From Gene Annotation to Function Prediction for Metagenomics.
    Sharifi F; Ye Y
    Methods Mol Biol; 2017; 1611():27-34. PubMed ID: 28451969
    [TBL] [Abstract][Full Text] [Related]  

  • 4. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VIROME: a standard operating procedure for analysis of viral metagenome sequences.
    Wommack KE; Bhavsar J; Polson SW; Chen J; Dumas M; Srinivasiah S; Furman M; Jamindar S; Nasko DJ
    Stand Genomic Sci; 2012 Jul; 6(3):427-39. PubMed ID: 23407591
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
    Nayfach S; Bradley PH; Wyman SK; Laurent TJ; Williams A; Eisen JA; Pollard KS; Sharpton TJ
    PLoS Comput Biol; 2015 Nov; 11(11):e1004573. PubMed ID: 26565399
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline.
    Eng A; Verster AJ; Borenstein E
    BMC Bioinformatics; 2020 Oct; 21(1):471. PubMed ID: 33087062
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis and comparison of very large metagenomes with fast clustering and functional annotation.
    Li W
    BMC Bioinformatics; 2009 Oct; 10():359. PubMed ID: 19863816
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs.
    Dong X; Strous M
    Front Genet; 2019; 10():999. PubMed ID: 31681429
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data.
    Suzuki S; Ishida T; Ohue M; Kakuta M; Akiyama Y
    Methods Mol Biol; 2017; 1611():15-25. PubMed ID: 28451968
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.
    Yu C; Zavaljevski N; Desai V; Johnson S; Stevens FJ; Reifman J
    BMC Bioinformatics; 2008 Jan; 9():52. PubMed ID: 18221520
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences.
    Morais DAA; Cavalcante JVF; Monteiro SS; Pasquali MAB; Dalmolin RJS
    Front Genet; 2022; 13():814437. PubMed ID: 35330728
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
    Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
    BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MOCAT2: a metagenomic assembly, annotation and profiling framework.
    Kultima JR; Coelho LP; Forslund K; Huerta-Cepas J; Li SS; Driessen M; Voigt AY; Zeller G; Sunagawa S; Bork P
    Bioinformatics; 2016 Aug; 32(16):2520-3. PubMed ID: 27153620
    [TBL] [Abstract][Full Text] [Related]  

  • 17. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
    Lin HH; Liao YC
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SmashCommunity: a metagenomic annotation and analysis tool.
    Arumugam M; Harrington ED; Foerstner KU; Raes J; Bork P
    Bioinformatics; 2010 Dec; 26(23):2977-8. PubMed ID: 20959381
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of methods for library construction and short read annotation of shellfish viral metagenomes.
    Wei HY; Huang S; Wang JY; Gao F; Jiang JZ
    Genes Genomics; 2018 Mar; 40(3):281-288. PubMed ID: 29892802
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 10.