These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 21886867)

  • 21. DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.
    Wang T; Mori H; Zhang C; Kurokawa K; Xing XH; Yamada T
    BMC Bioinformatics; 2015 Mar; 16():96. PubMed ID: 25888481
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 23. DATMA: Distributed AuTomatic Metagenomic Assembly and annotation framework.
    Benavides A; Sanchez F; Alzate JF; Cabarcas F
    PeerJ; 2020; 8():e9762. PubMed ID: 32953263
    [TBL] [Abstract][Full Text] [Related]  

  • 24. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
    Huntemann M; Ivanova NN; Mavromatis K; Tripp HJ; Paez-Espino D; Tennessen K; Palaniappan K; Szeto E; Pillay M; Chen IM; Pati A; Nielsen T; Markowitz VM; Kyrpides NC
    Stand Genomic Sci; 2016; 11():17. PubMed ID: 26918089
    [TBL] [Abstract][Full Text] [Related]  

  • 25. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
    Cantalapiedra CP; Hernández-Plaza A; Letunic I; Bork P; Huerta-Cepas J
    Mol Biol Evol; 2021 Dec; 38(12):5825-5829. PubMed ID: 34597405
    [TBL] [Abstract][Full Text] [Related]  

  • 26. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MetaStorm: A Public Resource for Customizable Metagenomics Annotation.
    Arango-Argoty G; Singh G; Heath LS; Pruden A; Xiao W; Zhang L
    PLoS One; 2016; 11(9):e0162442. PubMed ID: 27632579
    [TBL] [Abstract][Full Text] [Related]  

  • 28. DOE JGI Metagenome Workflow.
    Clum A; Huntemann M; Bushnell B; Foster B; Foster B; Roux S; Hajek PP; Varghese N; Mukherjee S; Reddy TBK; Daum C; Yoshinaga Y; O'Malley R; Seshadri R; Kyrpides NC; Eloe-Fadrosh EA; Chen IA; Copeland A; Ivanova NN
    mSystems; 2021 May; 6(3):. PubMed ID: 34006627
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data.
    Rowe W; Baker KS; Verner-Jeffreys D; Baker-Austin C; Ryan JJ; Maskell D; Pearce G
    PLoS One; 2015; 10(7):e0133492. PubMed ID: 26197475
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data.
    Chen JC; Tyler AD
    Biol Direct; 2020 Dec; 15(1):29. PubMed ID: 33302990
    [TBL] [Abstract][Full Text] [Related]  

  • 31. The effect of sequencing errors on metagenomic gene prediction.
    Hoff KJ
    BMC Genomics; 2009 Nov; 10():520. PubMed ID: 19909532
    [TBL] [Abstract][Full Text] [Related]  

  • 32. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
    Silva GGZ; Lopes FAC; Edwards RA
    Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data.
    Pereira-Flores E; Glöckner FO; Fernandez-Guerra A
    BMC Bioinformatics; 2019 Sep; 20(1):453. PubMed ID: 31488068
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes.
    Yang Y; Jiang XT; Zhang T
    PLoS One; 2014; 9(10):e110947. PubMed ID: 25347677
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 36. geneRFinder: gene finding in distinct metagenomic data complexities.
    Silva R; Padovani K; Góes F; Alves R
    BMC Bioinformatics; 2021 Feb; 22(1):87. PubMed ID: 33632132
    [TBL] [Abstract][Full Text] [Related]  

  • 37. VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
    Rangel-Pineros G; Almeida A; Beracochea M; Sakharova E; Marz M; Reyes Muñoz A; Hölzer M; Finn RD
    PLoS Comput Biol; 2023 Aug; 19(8):e1011422. PubMed ID: 37639475
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in Metagenomes.
    Verneau J; Levasseur A; Raoult D; La Scola B; Colson P
    Front Microbiol; 2016; 7():428. PubMed ID: 27065984
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Metagenome Assembly and Contig Assignment.
    Zhang Q
    Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.
    Tangherlini M; Dell'Anno A; Zeigler Allen L; Riccioni G; Corinaldesi C
    Sci Rep; 2016 Jun; 6():28428. PubMed ID: 27329207
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.