These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 21896509)

  • 1. SpliceTrap: a method to quantify alternative splicing under single cellular conditions.
    Wu J; Akerman M; Sun S; McCombie WR; Krainer AR; Zhang MQ
    Bioinformatics; 2011 Nov; 27(21):3010-6. PubMed ID: 21896509
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.
    Nariai N; Hirose O; Kojima K; Nagasaki M
    Bioinformatics; 2013 Sep; 29(18):2292-9. PubMed ID: 23821651
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
    Shi X; Wang X; Wang TL; Hilakivi-Clarke L; Clarke R; Xuan J
    Bioinformatics; 2018 Jan; 34(1):56-63. PubMed ID: 28968634
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CATANA: a tool for generating comprehensive annotations of alternative transcript events.
    Shiau CK; Huang JH; Tsai HK
    Bioinformatics; 2019 Apr; 35(8):1414-1415. PubMed ID: 30202999
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
    Shen S; Warzecha CC; Carstens RP; Xing Y
    Bioinformatics; 2010 Jan; 26(2):268-9. PubMed ID: 19933160
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrative deep models for alternative splicing.
    Jha A; Gazzara MR; Barash Y
    Bioinformatics; 2017 Jul; 33(14):i274-i282. PubMed ID: 28882000
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.
    LeGault LH; Dewey CN
    Bioinformatics; 2013 Sep; 29(18):2300-10. PubMed ID: 23846746
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
    Dao P; Numanagić I; Lin YY; Hach F; Karakoc E; Donmez N; Collins C; Eichler EE; Sahinalp SC
    Bioinformatics; 2014 Mar; 30(5):644-51. PubMed ID: 24130305
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context.
    Xiong HY; Barash Y; Frey BJ
    Bioinformatics; 2011 Sep; 27(18):2554-62. PubMed ID: 21803804
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates.
    Peng H; Yang Y; Zhe S; Wang J; Gribskov M; Qi Y
    Bioinformatics; 2017 Oct; 33(19):3018-3027. PubMed ID: 28595376
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
    Ryan MC; Cleland J; Kim R; Wong WC; Weinstein JN
    Bioinformatics; 2012 Sep; 28(18):2385-7. PubMed ID: 22820202
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identifying differentially spliced genes from two groups of RNA-seq samples.
    Wang W; Qin Z; Feng Z; Wang X; Zhang X
    Gene; 2013 Apr; 518(1):164-70. PubMed ID: 23228854
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inference of isoforms from short sequence reads.
    Feng J; Li W; Jiang T
    J Comput Biol; 2011 Mar; 18(3):305-21. PubMed ID: 21385036
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Isoform-level ribosome occupancy estimation guided by transcript abundance with Ribomap.
    Wang H; McManus J; Kingsford C
    Bioinformatics; 2016 Jun; 32(12):1880-2. PubMed ID: 27153676
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.
    Khan H; Mohamadi H; Vandervalk BP; Warren RL; Chu J; Birol I
    Bioinformatics; 2018 May; 34(10):1697-1704. PubMed ID: 29300846
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BRIE: transcriptome-wide splicing quantification in single cells.
    Huang Y; Sanguinetti G
    Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Quantitative visualization of alternative exon expression from RNA-seq data.
    Katz Y; Wang ET; Silterra J; Schwartz S; Wong B; Thorvaldsdóttir H; Robinson JT; Mesirov JP; Airoldi EM; Burge CB
    Bioinformatics; 2015 Jul; 31(14):2400-2. PubMed ID: 25617416
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments.
    Richard H; Schulz MH; Sultan M; Nürnberger A; Schrinner S; Balzereit D; Dagand E; Rasche A; Lehrach H; Vingron M; Haas SA; Yaspo ML
    Nucleic Acids Res; 2010 Jun; 38(10):e112. PubMed ID: 20150413
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.