157 related articles for article (PubMed ID: 21899423)
1. Double cut and join with insertions and deletions.
Braga MD; Willing E; Stoye J
J Comput Biol; 2011 Sep; 18(9):1167-84. PubMed ID: 21899423
[TBL] [Abstract][Full Text] [Related]
2. On the weight of indels in genomic distances.
Braga MD; Machado R; Ribeiro LC; Stoye J
BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S13. PubMed ID: 22151784
[TBL] [Abstract][Full Text] [Related]
3. Sorting Linear Genomes with Rearrangements and Indels.
Braga MD; Stoye J
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):500-6. PubMed ID: 26357261
[TBL] [Abstract][Full Text] [Related]
4. Restricted DCJ-indel model: sorting linear genomes with DCJ and indels.
da Silva PH; Machado R; Dantas S; Braga MD
BMC Bioinformatics; 2012; 13 Suppl 19(Suppl 19):S14. PubMed ID: 23281630
[TBL] [Abstract][Full Text] [Related]
5. Restricted DCJ model: rearrangement problems with chromosome reincorporation.
Kováč J; Warren R; Braga MD; Stoye J
J Comput Biol; 2011 Sep; 18(9):1231-41. PubMed ID: 21899428
[TBL] [Abstract][Full Text] [Related]
6. Genomic distance under gene substitutions.
Braga MD; Machado R; Ribeiro LC; Stoye J
BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S8. PubMed ID: 22151231
[TBL] [Abstract][Full Text] [Related]
7. Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes.
Bérard S; Chateau A; Chauve C; Paul C; Tannier E
J Comput Biol; 2009 Oct; 16(10):1287-309. PubMed ID: 19803733
[TBL] [Abstract][Full Text] [Related]
8. On the inversion-indel distance.
Willing E; Zaccaria S; Braga MD; Stoye J
BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S3. PubMed ID: 24564182
[TBL] [Abstract][Full Text] [Related]
9. Genome halving and double distance with losses.
Savard OT; Gagnon Y; Bertrand D; El-Mabrouk N
J Comput Biol; 2011 Sep; 18(9):1185-99. PubMed ID: 21899424
[TBL] [Abstract][Full Text] [Related]
10. The solution space of sorting by DCJ.
Braga MD; Stoye J
J Comput Biol; 2010 Sep; 17(9):1145-65. PubMed ID: 20874401
[TBL] [Abstract][Full Text] [Related]
11. Fast ancestral gene order reconstruction of genomes with unequal gene content.
Feijão P; Araujo E
BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
[TBL] [Abstract][Full Text] [Related]
12. DCJ path formulation for genome transformations which include insertions, deletions, and duplications.
Yancopoulos S; Friedberg R
J Comput Biol; 2009 Oct; 16(10):1311-38. PubMed ID: 19803734
[TBL] [Abstract][Full Text] [Related]
13. DCJ-indel and DCJ-substitution distances with distinct operation costs.
da Silva PH; Machado R; Dantas S; Braga MD
Algorithms Mol Biol; 2013 Jul; 8(1):21. PubMed ID: 23879938
[TBL] [Abstract][Full Text] [Related]
14. DCJ-Indel sorting revisited.
Compeau PE
Algorithms Mol Biol; 2013 Mar; 8(1):6. PubMed ID: 23452758
[TBL] [Abstract][Full Text] [Related]
15. Computing the Inversion-Indel Distance.
Willing E; Stoye J; Braga MDV
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2314-2326. PubMed ID: 32324562
[TBL] [Abstract][Full Text] [Related]
16. An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes.
Shao M; Lin Y; Moret BM
J Comput Biol; 2015 May; 22(5):425-35. PubMed ID: 25517208
[TBL] [Abstract][Full Text] [Related]
17. A phylogenetic analysis of indel dynamics in the cotton genus.
Grover CE; Yu Y; Wing RA; Paterson AH; Wendel JF
Mol Biol Evol; 2008 Jul; 25(7):1415-28. PubMed ID: 18400789
[TBL] [Abstract][Full Text] [Related]
18. A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes.
Lin Y; Moret BM
J Comput Biol; 2011 Sep; 18(9):1055-64. PubMed ID: 21899415
[TBL] [Abstract][Full Text] [Related]
19. Algebraic double cut and join : A group-theoretic approach to the operator on multichromosomal genomes.
Bhatia S; Egri-Nagy A; Francis AR
J Math Biol; 2015 Nov; 71(5):1149-78. PubMed ID: 25502846
[TBL] [Abstract][Full Text] [Related]
20. Generalizations of the genomic rank distance to indels.
Pereira Zanetti JP; Peres Oliveira L; Chindelevitch L; Meidanis J
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36790056
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]