BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

554 related articles for article (PubMed ID: 21899761)

  • 21. Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface.
    Soh J; Dong X; Caffrey SM; Voordouw G; Sensen CW
    J Biotechnol; 2013 Sep; 167(4):393-403. PubMed ID: 23871656
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Assessment of quality control approaches for metagenomic data analysis.
    Zhou Q; Su X; Ning K
    Sci Rep; 2014 Nov; 4():6957. PubMed ID: 25376098
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Bayesian mixture analysis for metagenomic community profiling.
    Morfopoulou S; Plagnol V
    Bioinformatics; 2015 Sep; 31(18):2930-8. PubMed ID: 26002885
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A user's guide to quantitative and comparative analysis of metagenomic datasets.
    Luo C; Rodriguez-R LM; Konstantinidis KT
    Methods Enzymol; 2013; 531():525-47. PubMed ID: 24060135
    [TBL] [Abstract][Full Text] [Related]  

  • 25. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 26. BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.
    Laczny CC; Kiefer C; Galata V; Fehlmann T; Backes C; Keller A
    Nucleic Acids Res; 2017 Jul; 45(W1):W171-W179. PubMed ID: 28472498
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Parallel-META: efficient metagenomic data analysis based on high-performance computation.
    Su X; Xu J; Ning K
    BMC Syst Biol; 2012; 6 Suppl 1(Suppl 1):S16. PubMed ID: 23046922
    [TBL] [Abstract][Full Text] [Related]  

  • 28. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
    Fosso B; Santamaria M; Marzano M; Alonso-Alemany D; Valiente G; Donvito G; Monaco A; Notarangelo P; Pesole G
    BMC Bioinformatics; 2015 Jul; 16():203. PubMed ID: 26130132
    [TBL] [Abstract][Full Text] [Related]  

  • 29. FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.
    Niu B; Zhu Z; Fu L; Wu S; Li W
    Bioinformatics; 2011 Jun; 27(12):1704-5. PubMed ID: 21505035
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Omega: an overlap-graph de novo assembler for metagenomics.
    Haider B; Ahn TH; Bushnell B; Chai J; Copeland A; Pan C
    Bioinformatics; 2014 Oct; 30(19):2717-22. PubMed ID: 24947750
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A metagenomics portal for a democratized sequencing world.
    Wilke A; Glass EM; Bartels D; Bischof J; Braithwaite D; D'Souza M; Gerlach W; Harrison T; Keegan K; Matthews H; Kottmann R; Paczian T; Tang W; Trimble WL; Yilmaz P; Wilkening J; Desai N; Meyer F
    Methods Enzymol; 2013; 531():487-523. PubMed ID: 24060134
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Interactive metagenomic visualization in a Web browser.
    Ondov BD; Bergman NH; Phillippy AM
    BMC Bioinformatics; 2011 Sep; 12():385. PubMed ID: 21961884
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.
    Su X; Pan W; Song B; Xu J; Ning K
    PLoS One; 2014; 9(3):e89323. PubMed ID: 24595159
    [TBL] [Abstract][Full Text] [Related]  

  • 34. ESAP plus: a web-based server for EST-SSR marker development.
    Ponyared P; Ponsawat J; Tongsima S; Seresangtakul P; Akkasaeng C; Tantisuwichwong N
    BMC Genomics; 2016 Dec; 17(Suppl 13):1035. PubMed ID: 28155670
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline.
    Eng A; Verster AJ; Borenstein E
    BMC Bioinformatics; 2020 Oct; 21(1):471. PubMed ID: 33087062
    [TBL] [Abstract][Full Text] [Related]  

  • 36. BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies.
    Pylro VS; Morais DK; de Oliveira FS; Dos Santos FG; Lemos LN; Oliveira G; Roesch LF
    Microb Ecol; 2016 Aug; 72(2):443-7. PubMed ID: 27220974
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CD-HIT Suite: a web server for clustering and comparing biological sequences.
    Huang Y; Niu B; Gao Y; Fu L; Li W
    Bioinformatics; 2010 Mar; 26(5):680-2. PubMed ID: 20053844
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
    Meyer F; Paarmann D; D'Souza M; Olson R; Glass EM; Kubal M; Paczian T; Rodriguez A; Stevens R; Wilke A; Wilkening J; Edwards RA
    BMC Bioinformatics; 2008 Sep; 9():386. PubMed ID: 18803844
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MAIRA- real-time taxonomic and functional analysis of long reads on a laptop.
    Albrecht B; Bağcı C; Huson DH
    BMC Bioinformatics; 2020 Sep; 21(Suppl 13):390. PubMed ID: 32938391
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Assessment of metagenomic assembly using simulated next generation sequencing data.
    Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
    PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 28.