148 related articles for article (PubMed ID: 21901742)
1. Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES.
Borodovsky M; Lomsadze A
Curr Protoc Bioinformatics; 2011 Sep; Chapter 4():4.6.1-4.6.10. PubMed ID: 21901742
[TBL] [Abstract][Full Text] [Related]
2. GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
Brůna T; Lomsadze A; Borodovsky M
Genome Res; 2024 Jun; 34(5):757-768. PubMed ID: 38866548
[TBL] [Abstract][Full Text] [Related]
3. A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.
Bruna T; Lomsadze A; Borodovsky M
bioRxiv; 2024 Apr; ():. PubMed ID: 36711453
[TBL] [Abstract][Full Text] [Related]
4. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M
Genome Res; 2024 Jun; 34(5):769-777. PubMed ID: 38866550
[TBL] [Abstract][Full Text] [Related]
5. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M
bioRxiv; 2024 Feb; ():. PubMed ID: 37398387
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of gene-finding programs on mammalian sequences.
Rogic S; Mackworth AK; Ouellette FB
Genome Res; 2001 May; 11(5):817-32. PubMed ID: 11337477
[TBL] [Abstract][Full Text] [Related]
7. Current methods of gene prediction, their strengths and weaknesses.
Mathé C; Sagot MF; Schiex T; Rouzé P
Nucleic Acids Res; 2002 Oct; 30(19):4103-17. PubMed ID: 12364589
[TBL] [Abstract][Full Text] [Related]
8. An assessment of gene prediction accuracy in large DNA sequences.
Guigó R; Agarwal P; Abril JF; Burset M; Fickett JW
Genome Res; 2000 Oct; 10(10):1631-42. PubMed ID: 11042160
[TBL] [Abstract][Full Text] [Related]
9. Tradict enables accurate prediction of eukaryotic transcriptional states from 100 marker genes.
Biswas S; Kerner K; Teixeira PJPL; Dangl JL; Jojic V; Wigge PA
Nat Commun; 2017 May; 8():15309. PubMed ID: 28474674
[TBL] [Abstract][Full Text] [Related]
10. A model for all genomes: the role of transcription factories.
Cook PR
J Mol Biol; 2010 Jan; 395(1):1-10. PubMed ID: 19852969
[TBL] [Abstract][Full Text] [Related]
11. CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
Testa AC; Hane JK; Ellwood SR; Oliver RP
BMC Genomics; 2015 Mar; 16(1):170. PubMed ID: 25887563
[TBL] [Abstract][Full Text] [Related]
12. Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm.
Lomsadze A; Burns PD; Borodovsky M
Nucleic Acids Res; 2014 Sep; 42(15):e119. PubMed ID: 24990371
[TBL] [Abstract][Full Text] [Related]
13. The reference genome of Macropodus opercularis (the paradise fish).
Fodor E; Okendo J; Szabó N; Szabó K; Czimer D; Tarján-Rácz A; Szeverényi I; Low BW; Liew JH; Koren S; Rhie A; Orbán L; Miklósi Á; Varga M; Burgess SM
Sci Data; 2024 May; 11(1):540. PubMed ID: 38796485
[TBL] [Abstract][Full Text] [Related]
14. Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae.
Wang B; Jia Y; Dang N; Yu J; Bush SJ; Gao S; He W; Wang S; Guo H; Yang X; Ma W; Ye K
BMC Genomics; 2024 Apr; 25(1):356. PubMed ID: 38600443
[TBL] [Abstract][Full Text] [Related]
15. Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57.
Lei Y; Zhang Y; Xu L; Ma W; Zhou Z; Li J; Quan P; Faruquee M; Yang D; Zhang F; Zhou Y; Quan G; Zhao X; Wang W; Liu B; Li Z; Xu J; Zheng T
Sci Data; 2024 Feb; 11(1):230. PubMed ID: 38388638
[TBL] [Abstract][Full Text] [Related]
16. Chromosome-level genome assembly of the giant ladybug Megalocaria dilatata.
Pu DQ; Wu XL; Chen ZT; Wei SJ; Cai P; Liu HL
Sci Data; 2024 Jan; 11(1):117. PubMed ID: 38267446
[TBL] [Abstract][Full Text] [Related]
17. Genome sequencing and molecular networking analysis of the wild fungus Anthostomella pinea reveal its ability to produce a diverse range of secondary metabolites.
Iacovelli R; He T; Allen JL; Hackl T; Haslinger K
Fungal Biol Biotechnol; 2024 Jan; 11(1):1. PubMed ID: 38172933
[TBL] [Abstract][Full Text] [Related]
18. Multi-omics analysis reveals the molecular response to heat stress in a "red tide" dinoflagellate.
Dougan KE; Deng ZL; Wöhlbrand L; Reuse C; Bunk B; Chen Y; Hartlich J; Hiller K; John U; Kalvelage J; Mansky J; Neumann-Schaal M; Overmann J; Petersen J; Sanchez-Garcia S; Schmidt-Hohagen K; Shah S; Spröer C; Sztajer H; Wang H; Bhattacharya D; Rabus R; Jahn D; Chan CX; Wagner-Döbler I
Genome Biol; 2023 Nov; 24(1):265. PubMed ID: 37996937
[TBL] [Abstract][Full Text] [Related]
19. Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K.
Parker MT; Fica SM; Barton GJ; Simpson GG
Elife; 2023 Oct; 12():. PubMed ID: 37787376
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]