473 related articles for article (PubMed ID: 21908672)
1. Defense islands in bacterial and archaeal genomes and prediction of novel defense systems.
Makarova KS; Wolf YI; Snir S; Koonin EV
J Bacteriol; 2011 Nov; 193(21):6039-56. PubMed ID: 21908672
[TBL] [Abstract][Full Text] [Related]
2. Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.
Makarova KS; Wolf YI; Koonin EV
Biol Direct; 2009 Jun; 4():19. PubMed ID: 19493340
[TBL] [Abstract][Full Text] [Related]
3. Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes.
Makarova KS; Anantharaman V; Aravind L; Koonin EV
Biol Direct; 2012 Nov; 7():40. PubMed ID: 23151069
[TBL] [Abstract][Full Text] [Related]
4. Evolutionary Genomics of Defense Systems in Archaea and Bacteria.
Koonin EV; Makarova KS; Wolf YI
Annu Rev Microbiol; 2017 Sep; 71():233-261. PubMed ID: 28657885
[TBL] [Abstract][Full Text] [Related]
5. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
Wolf YI; Rogozin IB; Kondrashov AS; Koonin EV
Genome Res; 2001 Mar; 11(3):356-72. PubMed ID: 11230160
[TBL] [Abstract][Full Text] [Related]
6. Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes.
Makarova KS; Wolf YI; Forterre P; Prangishvili D; Krupovic M; Koonin EV
Extremophiles; 2014 Sep; 18(5):877-93. PubMed ID: 25113822
[TBL] [Abstract][Full Text] [Related]
7. Comparative genomics of defense systems in archaea and bacteria.
Makarova KS; Wolf YI; Koonin EV
Nucleic Acids Res; 2013 Apr; 41(8):4360-77. PubMed ID: 23470997
[TBL] [Abstract][Full Text] [Related]
8. Phylogenomics of Cas4 family nucleases.
Hudaiberdiev S; Shmakov S; Wolf YI; Terns MP; Makarova KS; Koonin EV
BMC Evol Biol; 2017 Nov; 17(1):232. PubMed ID: 29179671
[TBL] [Abstract][Full Text] [Related]
9. Modified base-binding EVE and DCD domains: striking diversity of genomic contexts in prokaryotes and predicted involvement in a variety of cellular processes.
Bell RT; Wolf YI; Koonin EV
BMC Biol; 2020 Nov; 18(1):159. PubMed ID: 33148243
[TBL] [Abstract][Full Text] [Related]
10. CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species.
McDonald ND; Regmi A; Morreale DP; Borowski JD; Boyd EF
BMC Genomics; 2019 Feb; 20(1):105. PubMed ID: 30717668
[TBL] [Abstract][Full Text] [Related]
11. Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts.
Makarova KS; Wolf YI; Karamycheva S; Zhang D; Aravind L; Koonin EV
mBio; 2019 May; 10(3):. PubMed ID: 31064832
[TBL] [Abstract][Full Text] [Related]
12. The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts.
Oliveira PH; Touchon M; Rocha EP
Nucleic Acids Res; 2014; 42(16):10618-31. PubMed ID: 25120263
[TBL] [Abstract][Full Text] [Related]
13. CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules.
Carpenter MR; Kalburge SS; Borowski JD; Peters MC; Colwell RR; Boyd EF
J Bacteriol; 2017 May; 199(10):. PubMed ID: 28264992
[TBL] [Abstract][Full Text] [Related]
14. Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.
Makarova KS; Wolf YI; van der Oost J; Koonin EV
Biol Direct; 2009 Aug; 4():29. PubMed ID: 19706170
[TBL] [Abstract][Full Text] [Related]
15. Evidence of a large novel gene pool associated with prokaryotic genomic islands.
Hsiao WW; Ung K; Aeschliman D; Bryan J; Finlay BB; Brinkman FS
PLoS Genet; 2005 Nov; 1(5):e62. PubMed ID: 16299586
[TBL] [Abstract][Full Text] [Related]
16. SIGI: score-based identification of genomic islands.
Merkl R
BMC Bioinformatics; 2004 Mar; 5():22. PubMed ID: 15113412
[TBL] [Abstract][Full Text] [Related]
17. Reconstruction of the evolution of microbial defense systems.
Puigbò P; Makarova KS; Kristensen DM; Wolf YI; Koonin EV
BMC Evol Biol; 2017 Apr; 17(1):94. PubMed ID: 28376755
[TBL] [Abstract][Full Text] [Related]
18. Bacterial toxin-antitoxin systems: more than selfish entities?
Van Melderen L; Saavedra De Bast M
PLoS Genet; 2009 Mar; 5(3):e1000437. PubMed ID: 19325885
[TBL] [Abstract][Full Text] [Related]
19. The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes.
Shmakov SA; Sitnik V; Makarova KS; Wolf YI; Severinov KV; Koonin EV
mBio; 2017 Sep; 8(5):. PubMed ID: 28928211
[TBL] [Abstract][Full Text] [Related]
20. DISARM is a widespread bacterial defence system with broad anti-phage activities.
Ofir G; Melamed S; Sberro H; Mukamel Z; Silverman S; Yaakov G; Doron S; Sorek R
Nat Microbiol; 2018 Jan; 3(1):90-98. PubMed ID: 29085076
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
