408 related articles for article (PubMed ID: 21913748)
1. A constrained approach to multiscale stochastic simulation of chemically reacting systems.
Cotter SL; Zygalakis KC; Kevrekidis IG; Erban R
J Chem Phys; 2011 Sep; 135(9):094102. PubMed ID: 21913748
[TBL] [Abstract][Full Text] [Related]
2. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
Salis H; Kaznessis Y
J Chem Phys; 2005 Feb; 122(5):54103. PubMed ID: 15740306
[TBL] [Abstract][Full Text] [Related]
3. Moment estimation for chemically reacting systems by extended Kalman filtering.
Ruess J; Milias-Argeitis A; Summers S; Lygeros J
J Chem Phys; 2011 Oct; 135(16):165102. PubMed ID: 22047267
[TBL] [Abstract][Full Text] [Related]
4. Variable time-stepping in the pathwise numerical solution of the chemical Langevin equation.
Ilie S
J Chem Phys; 2012 Dec; 137(23):234110. PubMed ID: 23267474
[TBL] [Abstract][Full Text] [Related]
5. Spatially distributed stochastic systems: Equation-free and equation-assisted preconditioned computations.
Qiao L; Erban R; Kelley CT; Kevrekidis IG
J Chem Phys; 2006 Nov; 125(20):204108. PubMed ID: 17144691
[TBL] [Abstract][Full Text] [Related]
6. On the origins of approximations for stochastic chemical kinetics.
Haseltine EL; Rawlings JB
J Chem Phys; 2005 Oct; 123(16):164115. PubMed ID: 16268689
[TBL] [Abstract][Full Text] [Related]
7. Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.
Macnamara S; Bersani AM; Burrage K; Sidje RB
J Chem Phys; 2008 Sep; 129(9):095105. PubMed ID: 19044893
[TBL] [Abstract][Full Text] [Related]
8. An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks.
Salis H; Kaznessis YN
J Chem Phys; 2005 Dec; 123(21):214106. PubMed ID: 16356038
[TBL] [Abstract][Full Text] [Related]
9. A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks.
Ramaswamy R; González-Segredo N; Sbalzarini IF
J Chem Phys; 2009 Jun; 130(24):244104. PubMed ID: 19566139
[TBL] [Abstract][Full Text] [Related]
10. Accelerated stochastic simulation algorithm for coupled chemical reactions with delays.
Zhou W; Peng X; Yan Z; Wang Y
Comput Biol Chem; 2008 Aug; 32(4):240-2. PubMed ID: 18467179
[TBL] [Abstract][Full Text] [Related]
11. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.
Gómez-Uribe CA; Verghese GC
J Chem Phys; 2007 Jan; 126(2):024109. PubMed ID: 17228945
[TBL] [Abstract][Full Text] [Related]
12. Fast stochastic simulation of biochemical reaction systems by alternative formulations of the chemical Langevin equation.
Mélykúti B; Burrage K; Zygalakis KC
J Chem Phys; 2010 Apr; 132(16):164109. PubMed ID: 20441260
[TBL] [Abstract][Full Text] [Related]
13. Stochastic simulation of chemical kinetics.
Gillespie DT
Annu Rev Phys Chem; 2007; 58():35-55. PubMed ID: 17037977
[TBL] [Abstract][Full Text] [Related]
14. Stochastic quasi-steady state approximations for asymptotic solutions of the chemical master equation.
Alarcón T
J Chem Phys; 2014 May; 140(18):184109. PubMed ID: 24832255
[TBL] [Abstract][Full Text] [Related]
15. Quasiequilibrium approximation of fast reaction kinetics in stochastic biochemical systems.
Goutsias J
J Chem Phys; 2005 May; 122(18):184102. PubMed ID: 15918689
[TBL] [Abstract][Full Text] [Related]
16. Stochastic simulation of chemically reacting systems using multi-core processors.
Gillespie CS
J Chem Phys; 2012 Jan; 136(1):014101. PubMed ID: 22239763
[TBL] [Abstract][Full Text] [Related]
17. Unbiased tau-leap methods for stochastic simulation of chemically reacting systems.
Xu Z; Cai X
J Chem Phys; 2008 Apr; 128(15):154112. PubMed ID: 18433195
[TBL] [Abstract][Full Text] [Related]
18. Multiresolution stochastic simulations of reaction-diffusion processes.
Bayati B; Chatelain P; Koumoutsakos P
Phys Chem Chem Phys; 2008 Oct; 10(39):5963-6. PubMed ID: 18825283
[TBL] [Abstract][Full Text] [Related]
19. A multi-scaled approach for simulating chemical reaction systems.
Burrage K; Tian T; Burrage P
Prog Biophys Mol Biol; 2004; 85(2-3):217-34. PubMed ID: 15142745
[TBL] [Abstract][Full Text] [Related]
20. Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods.
Ramaswamy R; Sbalzarini IF
J Chem Phys; 2011 Dec; 135(24):244103. PubMed ID: 22225140
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
