These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 21935986)

  • 1. Antibody modeling assessment.
    Almagro JC; Beavers MP; Hernandez-Guzman F; Maier J; Shaulsky J; Butenhof K; Labute P; Thorsteinson N; Kelly K; Teplyakov A; Luo J; Sweet R; Gilliland GL
    Proteins; 2011 Nov; 79(11):3050-66. PubMed ID: 21935986
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Second antibody modeling assessment (AMA-II).
    Almagro JC; Teplyakov A; Luo J; Sweet RW; Kodangattil S; Hernandez-Guzman F; Gilliland GL
    Proteins; 2014 Aug; 82(8):1553-62. PubMed ID: 24668560
    [TBL] [Abstract][Full Text] [Related]  

  • 3. X-ray structures of the antigen-binding domains from three variants of humanized anti-p185HER2 antibody 4D5 and comparison with molecular modeling.
    Eigenbrot C; Randal M; Presta L; Carter P; Kossiakoff AA
    J Mol Biol; 1993 Feb; 229(4):969-95. PubMed ID: 8095303
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations.
    Shirai H; Ikeda K; Yamashita K; Tsuchiya Y; Sarmiento J; Liang S; Morokata T; Mizuguchi K; Higo J; Standley DM; Nakamura H
    Proteins; 2014 Aug; 82(8):1624-35. PubMed ID: 24756852
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated classification of antibody complementarity determining region 3 of the heavy chain (H3) loops into canonical forms and its application to protein structure prediction.
    Oliva B; Bates PA; Querol E; Avilés FX; Sternberg MJ
    J Mol Biol; 1998 Jun; 279(5):1193-210. PubMed ID: 9642095
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody.
    Berrondo M; Kaufmann S; Berrondo M
    Proteins; 2014 Aug; 82(8):1636-45. PubMed ID: 24777752
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ABGEN: a knowledge-based automated approach for antibody structure modeling.
    Mandal C; Kingery BD; Anchin JM; Subramaniam S; Linthicum DS
    Nat Biotechnol; 1996 Mar; 14(3):323-8. PubMed ID: 9630894
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Modeling the antigen combining site of an anti-dinitrophenyl antibody, ANO2.
    Bassolino-Klimas D; Bruccoleri RE; Subramaniam S
    Protein Sci; 1992 Nov; 1(11):1465-76. PubMed ID: 1303765
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Crystal structure of the disulfide-stabilized Fv fragment of anticancer antibody B1: conformational influence of an engineered disulfide bond.
    Almog O; Benhar I; Vasmatzis G; Tordova M; Lee B; Pastan I; Gilliland GL
    Proteins; 1998 May; 31(2):128-38. PubMed ID: 9593187
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Canonical antigen-binding loop structures in immunoglobulins: more structures, more canonical classes?
    Decanniere K; Muyldermans S; Wyns L
    J Mol Biol; 2000 Jun; 300(1):83-91. PubMed ID: 10864500
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformations of the third hypervariable region in the VH domain of immunoglobulins.
    Morea V; Tramontano A; Rustici M; Chothia C; Lesk AM
    J Mol Biol; 1998 Jan; 275(2):269-94. PubMed ID: 9466909
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of the three-dimensional structures of a humanized and a chimeric Fab of an anti-gamma-interferon antibody.
    Fan ZC; Shan L; Goldsteen BZ; Guddat LW; Thakur A; Landolfi NF; Co MS; Vasquez M; Queen C; Ramsland PA; Edmundson AB
    J Mol Recognit; 1999; 12(1):19-32. PubMed ID: 10398393
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting antibody complementarity determining region structures without classification.
    Choi Y; Deane CM
    Mol Biosyst; 2011 Dec; 7(12):3327-34. PubMed ID: 22011953
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Energy-based analysis and prediction of the orientation between light- and heavy-chain antibody variable domains.
    Narayanan A; Sellers BD; Jacobson MP
    J Mol Biol; 2009 May; 388(5):941-53. PubMed ID: 19324053
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structural model of the anti-snake-toxin antibody, M alpha 2,3.
    Tenette C; Ducancel F; Smith JC
    Proteins; 1996 Sep; 26(1):9-31. PubMed ID: 8880926
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Standard conformations for the canonical structures of immunoglobulins.
    Al-Lazikani B; Lesk AM; Chothia C
    J Mol Biol; 1997 Nov; 273(4):927-48. PubMed ID: 9367782
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MoFvAb: Modeling the Fv region of antibodies.
    Bujotzek A; Fuchs A; Qu C; Benz J; Klostermann S; Antes I; Georges G
    MAbs; 2015; 7(5):838-52. PubMed ID: 26176812
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Crystal structure of human germline antibody 3-23/B3.
    Malia TJ; Obmolova G; Almagro JC; Gilliland GL; Teplyakov A
    Mol Immunol; 2011 Jul; 48(12-13):1586-8. PubMed ID: 21605907
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detailed analysis of the free and bound conformations of an antibody. X-ray structures of Fab 17/9 and three different Fab-peptide complexes.
    Schulze-Gahmen U; Rini JM; Wilson IA
    J Mol Biol; 1993 Dec; 234(4):1098-118. PubMed ID: 8263915
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PIGS: automatic prediction of antibody structures.
    Marcatili P; Rosi A; Tramontano A
    Bioinformatics; 2008 Sep; 24(17):1953-4. PubMed ID: 18641403
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.