140 related articles for article (PubMed ID: 21938617)
1. How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome.
Vaquerizas JM; Teichmann SA; Luscombe NM
Methods Mol Biol; 2012; 786():3-19. PubMed ID: 21938617
[TBL] [Abstract][Full Text] [Related]
2. In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants.
Mochida K; Yoshida T; Sakurai T; Yamaguchi-Shinozaki K; Shinozaki K; Tran LS
DNA Res; 2011 Oct; 18(5):321-32. PubMed ID: 21729923
[TBL] [Abstract][Full Text] [Related]
3. Mathematical Programming for Modeling Expression of a Gene Using Gurobi Optimizer to Identify Its Transcriptional Regulators.
Muley VY
Methods Mol Biol; 2021; 2328():99-113. PubMed ID: 34251621
[TBL] [Abstract][Full Text] [Related]
4. Comparative genome-wide analysis of WRKY, MADS-box and MYB transcription factor families in Arabidopsis and rice.
Abdullah-Zawawi MR; Ahmad-Nizammuddin NF; Govender N; Harun S; Mohd-Assaad N; Mohamed-Hussein ZA
Sci Rep; 2021 Oct; 11(1):19678. PubMed ID: 34608238
[TBL] [Abstract][Full Text] [Related]
5. TFforge utilizes large-scale binding site divergence to identify transcriptional regulators involved in phenotypic differences.
Langer BE; Hiller M
Nucleic Acids Res; 2019 Feb; 47(4):e19. PubMed ID: 30496469
[TBL] [Abstract][Full Text] [Related]
6. Genomic repertoires of DNA-binding transcription factors across the tree of life.
Charoensawan V; Wilson D; Teichmann SA
Nucleic Acids Res; 2010 Nov; 38(21):7364-77. PubMed ID: 20675356
[TBL] [Abstract][Full Text] [Related]
7. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.
Panchy NL; Lloyd JP; Shiu SH
BMC Genomics; 2020 Feb; 21(1):159. PubMed ID: 32054475
[TBL] [Abstract][Full Text] [Related]
8. Comparative analysis of gene regulatory networks: from network reconstruction to evolution.
Thompson D; Regev A; Roy S
Annu Rev Cell Dev Biol; 2015; 31():399-428. PubMed ID: 26355593
[TBL] [Abstract][Full Text] [Related]
9. Computational approaches to study transcriptional regulation.
Babu MM
Biochem Soc Trans; 2008 Aug; 36(Pt 4):758-65. PubMed ID: 18631154
[TBL] [Abstract][Full Text] [Related]
10. Probing transcription factor combinatorics in different promoter classes and in enhancers.
Vandel J; Cassan O; Lèbre S; Lecellier CH; Bréhélin L
BMC Genomics; 2019 Feb; 20(1):103. PubMed ID: 30709337
[TBL] [Abstract][Full Text] [Related]
11. CrusTF: a comprehensive resource of transcriptomes for evolutionary and functional studies of crustacean transcription factors.
Qin J; Hu Y; Ma KY; Jiang X; Ho CH; Tsang LM; Yi L; Leung RWT; Chu KH
BMC Genomics; 2017 Nov; 18(1):908. PubMed ID: 29178828
[TBL] [Abstract][Full Text] [Related]
12. Dissecting the transcription networks of a cell using computational genomics.
Li H; Wang W
Curr Opin Genet Dev; 2003 Dec; 13(6):611-6. PubMed ID: 14638323
[TBL] [Abstract][Full Text] [Related]
13. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N; Polychronidou M; Lohmann I
PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
[TBL] [Abstract][Full Text] [Related]
14. Identification of interacting transcription factors regulating tissue gene expression in human.
Hu Z; Gallo SM
BMC Genomics; 2010 Jan; 11():49. PubMed ID: 20085649
[TBL] [Abstract][Full Text] [Related]
15. Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.
Xiao ZD; Diao LT; Yang JH; Xu H; Huang MB; Deng YJ; Zhou H; Qu LH
Nucleic Acids Res; 2013 Jan; 41(1):e5. PubMed ID: 22941648
[TBL] [Abstract][Full Text] [Related]
16. Ab initio identification of putative human transcription factor binding sites by comparative genomics.
Corà D; Herrmann C; Dieterich C; Di Cunto F; Provero P; Caselle M
BMC Bioinformatics; 2005 May; 6():110. PubMed ID: 15865625
[TBL] [Abstract][Full Text] [Related]
17. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
[TBL] [Abstract][Full Text] [Related]
18. Computational identification of transcriptional regulatory elements in DNA sequence.
GuhaThakurta D
Nucleic Acids Res; 2006; 34(12):3585-98. PubMed ID: 16855295
[TBL] [Abstract][Full Text] [Related]
19. Informational requirements for transcriptional regulation.
O'Neill PK; Forder R; Erill I
J Comput Biol; 2014 May; 21(5):373-84. PubMed ID: 24689750
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]