These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 21940186)

  • 21. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 22. SOS-NMR: a saturation transfer NMR-based method for determining the structures of protein-ligand complexes.
    Hajduk PJ; Mack JC; Olejniczak ET; Park C; Dandliker PJ; Beutel BA
    J Am Chem Soc; 2004 Mar; 126(8):2390-8. PubMed ID: 14982445
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Performance of protein-ligand docking with simulated chemical shift perturbations.
    Ten Brink T; Aguirre C; Exner TE; Krimm I
    J Chem Inf Model; 2015 Feb; 55(2):275-83. PubMed ID: 25357133
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Protein-ligand docking against non-native protein conformers.
    Verdonk ML; Mortenson PN; Hall RJ; Hartshorn MJ; Murray CW
    J Chem Inf Model; 2008 Nov; 48(11):2214-25. PubMed ID: 18954138
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Protein kinases: docking and homology modeling reliability.
    Tuccinardi T; Botta M; Giordano A; Martinelli A
    J Chem Inf Model; 2010 Aug; 50(8):1432-41. PubMed ID: 20726600
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Lead finder: an approach to improve accuracy of protein-ligand docking, binding energy estimation, and virtual screening.
    Stroganov OV; Novikov FN; Stroylov VS; Kulkov V; Chilov GG
    J Chem Inf Model; 2008 Dec; 48(12):2371-85. PubMed ID: 19007114
    [TBL] [Abstract][Full Text] [Related]  

  • 27. NMR-guided molecular docking of a protein-peptide complex based on ant colony optimization.
    Korb O; Möller HM; Exner TE
    ChemMedChem; 2010 Jul; 5(7):1001-6. PubMed ID: 20486157
    [TBL] [Abstract][Full Text] [Related]  

  • 28. BALLDock/SLICK: a new method for protein-carbohydrate docking.
    Kerzmann A; Fuhrmann J; Kohlbacher O; Neumann D
    J Chem Inf Model; 2008 Aug; 48(8):1616-25. PubMed ID: 18646839
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Protein dynamics from NMR.
    Ishima R; Torchia DA
    Nat Struct Biol; 2000 Sep; 7(9):740-3. PubMed ID: 10966641
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Modeling of metal interaction geometries for protein-ligand docking.
    Seebeck B; Reulecke I; Kämper A; Rarey M
    Proteins; 2008 May; 71(3):1237-54. PubMed ID: 18041759
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Analysis of protein/ligand interactions with NMR diffusion measurements: the importance of eliminating the protein background.
    Derrick TS; McCord EF; Larive CK
    J Magn Reson; 2002 Apr; 155(2):217-25. PubMed ID: 12036332
    [TBL] [Abstract][Full Text] [Related]  

  • 32. NMR studies of protein-ligand interactions.
    Maurer T
    Methods Mol Biol; 2005; 305():197-214. PubMed ID: 15939999
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Influence of conformational flexibility on complexation-induced changes in chemical shift in a neocarzinostatin protein-ligand complex.
    Cioffi M; Hunter CA; Packer MJ
    J Med Chem; 2008 Aug; 51(15):4488-95. PubMed ID: 18624396
    [TBL] [Abstract][Full Text] [Related]  

  • 34. WHISCY: what information does surface conservation yield? Application to data-driven docking.
    de Vries SJ; van Dijk AD; Bonvin AM
    Proteins; 2006 May; 63(3):479-89. PubMed ID: 16450362
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy.
    Erickson JA; Jalaie M; Robertson DH; Lewis RA; Vieth M
    J Med Chem; 2004 Jan; 47(1):45-55. PubMed ID: 14695819
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Rapid protein-ligand costructures using chemical shift perturbations.
    Stark J; Powers R
    J Am Chem Soc; 2008 Jan; 130(2):535-45. PubMed ID: 18088118
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SDOCKER: a method utilizing existing X-ray structures to improve docking accuracy.
    Wu G; Vieth M
    J Med Chem; 2004 Jun; 47(12):3142-8. PubMed ID: 15163194
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Evaluating protein structures determined by structural genomics consortia.
    Bhattacharya A; Tejero R; Montelione GT
    Proteins; 2007 Mar; 66(4):778-95. PubMed ID: 17186527
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An NMR method to study protein-protein interactions.
    Nishida N; Shimada I
    Methods Mol Biol; 2012; 757():129-37. PubMed ID: 21909911
    [TBL] [Abstract][Full Text] [Related]  

  • 40. ProPose: steered virtual screening by simultaneous protein-ligand docking and ligand-ligand alignment.
    Seifert MH
    J Chem Inf Model; 2005; 45(2):449-60. PubMed ID: 15807511
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.