These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

304 related articles for article (PubMed ID: 21953925)

  • 1. Investigation of the binding of a carbohydrate-mimetic peptide to its complementary anticarbohydrate antibody by STD-NMR spectroscopy and molecular-dynamics simulations.
    Szczepina MG; Bleile DW; Pinto BM
    Chemistry; 2011 Oct; 17(41):11446-55. PubMed ID: 21953925
    [TBL] [Abstract][Full Text] [Related]  

  • 2. WaterLOGSY NMR experiments in conjunction with molecular-dynamics simulations identify immobilized water molecules that bridge peptide mimic MDWNMHAA to anticarbohydrate antibody SYA/J6.
    Szczepina MG; Bleile DW; Müllegger J; Lewis AR; Pinto BM
    Chemistry; 2011 Oct; 17(41):11438-45. PubMed ID: 21887835
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CORCEMA refinement of the bound ligand conformation within the protein binding pocket in reversibly forming weak complexes using STD-NMR intensities.
    Jayalakshmi V; Rama Krishna N
    J Magn Reson; 2004 May; 168(1):36-45. PubMed ID: 15082247
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complete relaxation and conformational exchange matrix (CORCEMA) analysis of intermolecular saturation transfer effects in reversibly forming ligand-receptor complexes.
    Jayalakshmi V; Krishna NR
    J Magn Reson; 2002 Mar; 155(1):106-18. PubMed ID: 11945039
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular dynamics simulations of carbohydrate-mimetic haptens in complex with a complementary anti-carbohydrate antibody.
    Shi Y; Pinto BM
    Carbohydr Res; 2012 Sep; 358():89-95. PubMed ID: 22789717
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Design, synthesis, and immunochemical characterization of a chimeric glycopeptide corresponding to the Shigella flexneri Y O-polysaccharide and its peptide mimic MDWNMHAA.
    Hossany BR; Johnston BD; Wen X; Borrelli S; Yuan Y; Johnson MA; Pinto BM
    Carbohydr Res; 2009 Aug; 344(12):1412-27. PubMed ID: 19467535
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Refinement of the conformation of UDP-galactose bound to galactosyltransferase using the STD NMR intensity-restrained CORCEMA optimization.
    Jayalakshmi V; Biet T; Peters T; Krishna NR
    J Am Chem Soc; 2004 Jul; 126(28):8610-1. PubMed ID: 15250687
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Quantitative Analysis of STD-NMR Spectra of Reversibly Forming Ligand-Receptor Complexes.
    Krishna NR; Jayalakshmi V
    Top Curr Chem; 2008; 273():15-54. PubMed ID: 23605458
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Toward a better understanding of the basis of the molecular mimicry of polysaccharide antigens by peptides: the example of Shigella flexneri 5a.
    Clément MJ; Fortuné A; Phalipon A; Marcel-Peyre V; Simenel C; Imberty A; Delepierre M; Mulard LA
    J Biol Chem; 2006 Jan; 281(4):2317-32. PubMed ID: 16251186
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A combined STD-NMR/molecular modeling protocol for predicting the binding modes of the glycosidase inhibitors kifunensine and salacinol to Golgi alpha-mannosidase II.
    Wen X; Yuan Y; Kuntz DA; Rose DR; Pinto BM
    Biochemistry; 2005 May; 44(18):6729-37. PubMed ID: 15865418
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Determination of the conformation of trimethoprim in the binding pocket of bovine dihydrofolate reductase from a STD-NMR intensity-restrained CORCEMA-ST optimization.
    Jayalakshmi V; Krishna NR
    J Am Chem Soc; 2005 Oct; 127(40):14080-4. PubMed ID: 16201830
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ligand-receptor binding affinities from saturation transfer difference (STD) NMR spectroscopy: the binding isotherm of STD initial growth rates.
    Angulo J; Enríquez-Navas PM; Nieto PM
    Chemistry; 2010 Jul; 16(26):7803-12. PubMed ID: 20496354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combined molecular dynamics, STD-NMR, and CORCEMA protocol yields structural model for a UDP-galactopyranose mutase-inhibitor complex.
    Shi Y; Ardá A; Pinto BM
    Bioorg Med Chem Lett; 2015 Mar; 25(6):1284-7. PubMed ID: 25681227
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
    Murata T; Hemmi H; Nakamura S; Shimizu K; Suzuki Y; Yamaguchi I
    FEBS J; 2005 Oct; 272(19):4938-48. PubMed ID: 16176267
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular conformations in the pentasaccharide LNF-1 derived from NMR spectroscopy and molecular dynamics simulations.
    Säwén E; Stevensson B; Ostervall J; Maliniak A; Widmalm G
    J Phys Chem B; 2011 Jun; 115(21):7109-21. PubMed ID: 21545157
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance.
    Theillet FX; Frank M; Vulliez-Le Normand B; Simenel C; Hoos S; Chaffotte A; Bélot F; Guerreiro C; Nato F; Phalipon A; Mulard LA; Delepierre M
    Glycobiology; 2011 Dec; 21(12):1570-9. PubMed ID: 21610193
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Saturation transfer difference NMR spectroscopy as a technique to investigate protein-carbohydrate interactions in solution.
    Haselhorst T; Lamerz AC; Itzstein Mv
    Methods Mol Biol; 2009; 534():375-86. PubMed ID: 19277538
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Epitope mapping of the phosphorylation motif of the HIV-1 protein Vpu bound to the selective monoclonal antibody using TRNOESY and STD NMR spectroscopy.
    Gharbi-Benarous J; Bertho G; Evrard-Todeschi N; Coadou G; Megy S; Delaunay T; Benarous R; Girault JP
    Biochemistry; 2004 Nov; 43(46):14555-65. PubMed ID: 15544326
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Saturation-transfer difference NMR studies for the epitope mapping of a carbohydrate-mimetic peptide recognized by an anti-carbohydrate antibody.
    Johnson MA; Pinto BM
    Bioorg Med Chem; 2004 Jan; 12(1):295-300. PubMed ID: 14697795
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structures of glycans bound to receptors from saturation transfer difference (STD) NMR spectroscopy: quantitative analysis by using CORCEMA-ST.
    Enríquez-Navas PM; Guzzi C; Muñoz-García JC; Nieto PM; Angulo J
    Methods Mol Biol; 2015; 1273():475-87. PubMed ID: 25753726
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.