309 related articles for article (PubMed ID: 21953925)
1. Investigation of the binding of a carbohydrate-mimetic peptide to its complementary anticarbohydrate antibody by STD-NMR spectroscopy and molecular-dynamics simulations.
Szczepina MG; Bleile DW; Pinto BM
Chemistry; 2011 Oct; 17(41):11446-55. PubMed ID: 21953925
[TBL] [Abstract][Full Text] [Related]
2. WaterLOGSY NMR experiments in conjunction with molecular-dynamics simulations identify immobilized water molecules that bridge peptide mimic MDWNMHAA to anticarbohydrate antibody SYA/J6.
Szczepina MG; Bleile DW; Müllegger J; Lewis AR; Pinto BM
Chemistry; 2011 Oct; 17(41):11438-45. PubMed ID: 21887835
[TBL] [Abstract][Full Text] [Related]
3. CORCEMA refinement of the bound ligand conformation within the protein binding pocket in reversibly forming weak complexes using STD-NMR intensities.
Jayalakshmi V; Rama Krishna N
J Magn Reson; 2004 May; 168(1):36-45. PubMed ID: 15082247
[TBL] [Abstract][Full Text] [Related]
4. Complete relaxation and conformational exchange matrix (CORCEMA) analysis of intermolecular saturation transfer effects in reversibly forming ligand-receptor complexes.
Jayalakshmi V; Krishna NR
J Magn Reson; 2002 Mar; 155(1):106-18. PubMed ID: 11945039
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics simulations of carbohydrate-mimetic haptens in complex with a complementary anti-carbohydrate antibody.
Shi Y; Pinto BM
Carbohydr Res; 2012 Sep; 358():89-95. PubMed ID: 22789717
[TBL] [Abstract][Full Text] [Related]
6. Design, synthesis, and immunochemical characterization of a chimeric glycopeptide corresponding to the Shigella flexneri Y O-polysaccharide and its peptide mimic MDWNMHAA.
Hossany BR; Johnston BD; Wen X; Borrelli S; Yuan Y; Johnson MA; Pinto BM
Carbohydr Res; 2009 Aug; 344(12):1412-27. PubMed ID: 19467535
[TBL] [Abstract][Full Text] [Related]
7. Refinement of the conformation of UDP-galactose bound to galactosyltransferase using the STD NMR intensity-restrained CORCEMA optimization.
Jayalakshmi V; Biet T; Peters T; Krishna NR
J Am Chem Soc; 2004 Jul; 126(28):8610-1. PubMed ID: 15250687
[TBL] [Abstract][Full Text] [Related]
8. Quantitative Analysis of STD-NMR Spectra of Reversibly Forming Ligand-Receptor Complexes.
Krishna NR; Jayalakshmi V
Top Curr Chem; 2008; 273():15-54. PubMed ID: 23605458
[TBL] [Abstract][Full Text] [Related]
9. Toward a better understanding of the basis of the molecular mimicry of polysaccharide antigens by peptides: the example of Shigella flexneri 5a.
Clément MJ; Fortuné A; Phalipon A; Marcel-Peyre V; Simenel C; Imberty A; Delepierre M; Mulard LA
J Biol Chem; 2006 Jan; 281(4):2317-32. PubMed ID: 16251186
[TBL] [Abstract][Full Text] [Related]
10. A combined STD-NMR/molecular modeling protocol for predicting the binding modes of the glycosidase inhibitors kifunensine and salacinol to Golgi alpha-mannosidase II.
Wen X; Yuan Y; Kuntz DA; Rose DR; Pinto BM
Biochemistry; 2005 May; 44(18):6729-37. PubMed ID: 15865418
[TBL] [Abstract][Full Text] [Related]
11. Determination of the conformation of trimethoprim in the binding pocket of bovine dihydrofolate reductase from a STD-NMR intensity-restrained CORCEMA-ST optimization.
Jayalakshmi V; Krishna NR
J Am Chem Soc; 2005 Oct; 127(40):14080-4. PubMed ID: 16201830
[TBL] [Abstract][Full Text] [Related]
12. Ligand-receptor binding affinities from saturation transfer difference (STD) NMR spectroscopy: the binding isotherm of STD initial growth rates.
Angulo J; Enríquez-Navas PM; Nieto PM
Chemistry; 2010 Jul; 16(26):7803-12. PubMed ID: 20496354
[TBL] [Abstract][Full Text] [Related]
13. Combined molecular dynamics, STD-NMR, and CORCEMA protocol yields structural model for a UDP-galactopyranose mutase-inhibitor complex.
Shi Y; Ardá A; Pinto BM
Bioorg Med Chem Lett; 2015 Mar; 25(6):1284-7. PubMed ID: 25681227
[TBL] [Abstract][Full Text] [Related]
14. Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Murata T; Hemmi H; Nakamura S; Shimizu K; Suzuki Y; Yamaguchi I
FEBS J; 2005 Oct; 272(19):4938-48. PubMed ID: 16176267
[TBL] [Abstract][Full Text] [Related]
15. Molecular conformations in the pentasaccharide LNF-1 derived from NMR spectroscopy and molecular dynamics simulations.
Säwén E; Stevensson B; Ostervall J; Maliniak A; Widmalm G
J Phys Chem B; 2011 Jun; 115(21):7109-21. PubMed ID: 21545157
[TBL] [Abstract][Full Text] [Related]
16. Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance.
Theillet FX; Frank M; Vulliez-Le Normand B; Simenel C; Hoos S; Chaffotte A; Bélot F; Guerreiro C; Nato F; Phalipon A; Mulard LA; Delepierre M
Glycobiology; 2011 Dec; 21(12):1570-9. PubMed ID: 21610193
[TBL] [Abstract][Full Text] [Related]
17. Saturation transfer difference NMR spectroscopy as a technique to investigate protein-carbohydrate interactions in solution.
Haselhorst T; Lamerz AC; Itzstein Mv
Methods Mol Biol; 2009; 534():375-86. PubMed ID: 19277538
[TBL] [Abstract][Full Text] [Related]
18. Epitope mapping of the phosphorylation motif of the HIV-1 protein Vpu bound to the selective monoclonal antibody using TRNOESY and STD NMR spectroscopy.
Gharbi-Benarous J; Bertho G; Evrard-Todeschi N; Coadou G; Megy S; Delaunay T; Benarous R; Girault JP
Biochemistry; 2004 Nov; 43(46):14555-65. PubMed ID: 15544326
[TBL] [Abstract][Full Text] [Related]
19. Saturation-transfer difference NMR studies for the epitope mapping of a carbohydrate-mimetic peptide recognized by an anti-carbohydrate antibody.
Johnson MA; Pinto BM
Bioorg Med Chem; 2004 Jan; 12(1):295-300. PubMed ID: 14697795
[TBL] [Abstract][Full Text] [Related]
20. Structures of glycans bound to receptors from saturation transfer difference (STD) NMR spectroscopy: quantitative analysis by using CORCEMA-ST.
Enríquez-Navas PM; Guzzi C; Muñoz-García JC; Nieto PM; Angulo J
Methods Mol Biol; 2015; 1273():475-87. PubMed ID: 25753726
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
