These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

448 related articles for article (PubMed ID: 21963794)

  • 1. UCSF Chimera, MODELLER, and IMP: an integrated modeling system.
    Yang Z; Lasker K; Schneidman-Duhovny D; Webb B; Huang CC; Pettersen EF; Goddard TD; Meng EC; Sali A; Ferrin TE
    J Struct Biol; 2012 Sep; 179(3):269-78. PubMed ID: 21963794
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Macromolecular assembly structures by comparative modeling and electron microscopy.
    Lasker K; Velázquez-Muriel JA; Webb BM; Yang Z; Ferrin TE; Sali A
    Methods Mol Biol; 2012; 857():331-50. PubMed ID: 22323229
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FoXS: a web server for rapid computation and fitting of SAXS profiles.
    Schneidman-Duhovny D; Hammel M; Sali A
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W540-4. PubMed ID: 20507903
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Global rigid body modeling of macromolecular complexes against small-angle scattering data.
    Petoukhov MV; Svergun DI
    Biophys J; 2005 Aug; 89(2):1237-50. PubMed ID: 15923225
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ModBase, a database of annotated comparative protein structure models, and associated resources.
    Pieper U; Webb BM; Barkan DT; Schneidman-Duhovny D; Schlessinger A; Braberg H; Yang Z; Meng EC; Pettersen EF; Huang CC; Datta RS; Sampathkumar P; Madhusudhan MS; Sjölander K; Ferrin TE; Burley SK; Sali A
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D465-74. PubMed ID: 21097780
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accurate SAXS profile computation and its assessment by contrast variation experiments.
    Schneidman-Duhovny D; Hammel M; Tainer JA; Sali A
    Biophys J; 2013 Aug; 105(4):962-74. PubMed ID: 23972848
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles.
    Schneidman-Duhovny D; Hammel M; Tainer JA; Sali A
    Nucleic Acids Res; 2016 Jul; 44(W1):W424-9. PubMed ID: 27151198
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Visualizing density maps with UCSF Chimera.
    Goddard TD; Huang CC; Ferrin TE
    J Struct Biol; 2007 Jan; 157(1):281-7. PubMed ID: 16963278
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GPU-powered tools boost molecular visualization.
    Chavent M; Lévy B; Krone M; Bidmon K; Nominé JP; Ertl T; Baaden M
    Brief Bioinform; 2011 Nov; 12(6):689-701. PubMed ID: 21310717
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Tools for integrated sequence-structure analysis with UCSF Chimera.
    Meng EC; Pettersen EF; Couch GS; Huang CC; Ferrin TE
    BMC Bioinformatics; 2006 Jul; 7():339. PubMed ID: 16836757
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies.
    Förster F; Webb B; Krukenberg KA; Tsuruta H; Agard DA; Sali A
    J Mol Biol; 2008 Oct; 382(4):1089-106. PubMed ID: 18694757
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural Modeling Using Solution Small-Angle X-ray Scattering (SAXS).
    Gräwert TW; Svergun DI
    J Mol Biol; 2020 Apr; 432(9):3078-3092. PubMed ID: 32035901
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis of X-ray and neutron scattering from biomacromolecular solutions.
    Petoukhov MV; Svergun DI
    Curr Opin Struct Biol; 2007 Oct; 17(5):562-71. PubMed ID: 17714935
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modeling Biological Complexes Using Integrative Modeling Platform.
    Saltzberg D; Greenberg CH; Viswanath S; Chemmama I; Webb B; Pellarin R; Echeverria I; Sali A
    Methods Mol Biol; 2019; 2022():353-377. PubMed ID: 31396911
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Determination of a molecular shape for netrin-4 from hydrodynamic and small angle X-ray scattering measurements.
    Patel TR; Reuten R; Xiong S; Meier M; Winzor DJ; Koch M; Stetefeld J
    Matrix Biol; 2012 Mar; 31(2):135-40. PubMed ID: 22210009
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structural studies of RNA-protein complexes: A hybrid approach involving hydrodynamics, scattering, and computational methods.
    Patel TR; Chojnowski G; Astha ; Koul A; McKenna SA; Bujnicki JM
    Methods; 2017 Apr; 118-119():146-162. PubMed ID: 27939506
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrative structural modeling with small angle X-ray scattering profiles.
    Schneidman-Duhovny D; Kim SJ; Sali A
    BMC Struct Biol; 2012 Jul; 12():17. PubMed ID: 22800408
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Subunit arrangement in the dodecameric chloroplast small heat shock protein Hsp21.
    Lambert W; Koeck PJ; Ahrman E; Purhonen P; Cheng K; Elmlund D; Hebert H; Emanuelsson C
    Protein Sci; 2011 Feb; 20(2):291-301. PubMed ID: 21280121
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Atomic-resolution structural information from scattering experiments on macromolecules in solution.
    Köfinger J; Hummer G
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 May; 87(5):052712. PubMed ID: 23767571
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ModBase, a database of annotated comparative protein structure models and associated resources.
    Pieper U; Webb BM; Dong GQ; Schneidman-Duhovny D; Fan H; Kim SJ; Khuri N; Spill YG; Weinkam P; Hammel M; Tainer JA; Nilges M; Sali A
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D336-46. PubMed ID: 24271400
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.