These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
101 related articles for article (PubMed ID: 21994228)
1. Visualization and quality assessment of de novo genome assemblies. Riba-Grognuz O; Keller L; Falquet L; Xenarios I; Wurm Y Bioinformatics; 2011 Dec; 27(24):3425-6. PubMed ID: 21994228 [TBL] [Abstract][Full Text] [Related]
2. Bandage: interactive visualization of de novo genome assemblies. Wick RR; Schultz MB; Zobel J; Holt KE Bioinformatics; 2015 Oct; 31(20):3350-2. PubMed ID: 26099265 [TBL] [Abstract][Full Text] [Related]
3. ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads. Coombe L; Warren RL; Wong J; Nikolic V; Birol I Curr Protoc; 2023 Apr; 3(4):e733. PubMed ID: 37039735 [TBL] [Abstract][Full Text] [Related]
4. SCOP: a novel scaffolding algorithm based on contig classification and optimization. Li M; Tang L; Wu FX; Pan Y; Wang J Bioinformatics; 2019 Apr; 35(7):1142-1150. PubMed ID: 30184046 [TBL] [Abstract][Full Text] [Related]
5. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework. Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408 [TBL] [Abstract][Full Text] [Related]
6. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies. Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642 [TBL] [Abstract][Full Text] [Related]
11. Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis. Malik L; Almodaresi F; Patro R Bioinformatics; 2018 Oct; 34(19):3265-3272. PubMed ID: 29746620 [TBL] [Abstract][Full Text] [Related]
13. SGTK: a toolkit for visualization and assessment of scaffold graphs. Kunyavskaya O; Prjibelski AD Bioinformatics; 2019 Jul; 35(13):2303-2305. PubMed ID: 30475983 [TBL] [Abstract][Full Text] [Related]
14. rnaQUAST: a quality assessment tool for de novo transcriptome assemblies. Bushmanova E; Antipov D; Lapidus A; Suvorov V; Prjibelski AD Bioinformatics; 2016 Jul; 32(14):2210-2. PubMed ID: 27153654 [TBL] [Abstract][Full Text] [Related]
15. Accurate detection of chimeric contigs via Bionano optical maps. Pan W; Lonardi S Bioinformatics; 2019 May; 35(10):1760-1762. PubMed ID: 30295726 [TBL] [Abstract][Full Text] [Related]
16. Lep-Anchor: automated construction of linkage map anchored haploid genomes. Rastas P Bioinformatics; 2020 Apr; 36(8):2359-2364. PubMed ID: 31913460 [TBL] [Abstract][Full Text] [Related]