These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

529 related articles for article (PubMed ID: 22000512)

  • 1. A new generation of crystallographic validation tools for the protein data bank.
    Read RJ; Adams PD; Arendall WB; Brunger AT; Emsley P; Joosten RP; Kleywegt GJ; Krissinel EB; Lütteke T; Otwinowski Z; Perrakis A; Richardson JS; Sheffler WH; Smith JL; Tickle IJ; Vriend G; Zwart PH
    Structure; 2011 Oct; 19(10):1395-412. PubMed ID: 22000512
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank.
    Yang H; Guranovic V; Dutta S; Feng Z; Berman HM; Westbrook JD
    Acta Crystallogr D Biol Crystallogr; 2004 Oct; 60(Pt 10):1833-9. PubMed ID: 15388930
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Worldwide Protein Data Bank validation information: usage and trends.
    Smart OS; Horský V; Gore S; Svobodová Vařeková R; Bendová V; Kleywegt GJ; Velankar S
    Acta Crystallogr D Struct Biol; 2018 Mar; 74(Pt 3):237-244. PubMed ID: 29533231
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
    Adams PD; Afonine PV; Baskaran K; Berman HM; Berrisford J; Bricogne G; Brown DG; Burley SK; Chen M; Feng Z; Flensburg C; Gutmanas A; Hoch JC; Ikegawa Y; Kengaku Y; Krissinel E; Kurisu G; Liang Y; Liebschner D; Mak L; Markley JL; Moriarty NW; Murshudov GN; Noble M; Peisach E; Persikova I; Poon BK; Sobolev OV; Ulrich EL; Velankar S; Vonrhein C; Westbrook J; Wojdyr M; Yokochi M; Young JY
    Acta Crystallogr D Struct Biol; 2019 Apr; 75(Pt 4):451-454. PubMed ID: 30988261
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Criteria to Extract High-Quality Protein Data Bank Subsets for Structure Users.
    Carugo O; Djinović-Carugo K
    Methods Mol Biol; 2016; 1415():139-52. PubMed ID: 27115631
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Building a structured PDB: the RS-PDB database.
    Szabadka Z; Grolmusz V
    Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():5755-8. PubMed ID: 17945915
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Stereochemistry and Validation of Macromolecular Structures.
    Wlodawer A
    Methods Mol Biol; 2017; 1607():595-610. PubMed ID: 28573590
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data.
    Terwilliger TC; Bricogne G
    Acta Crystallogr D Biol Crystallogr; 2014 Oct; 70(Pt 10):2533-43. PubMed ID: 25286839
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Homology-based hydrogen bond information improves crystallographic structures in the PDB.
    van Beusekom B; Touw WG; Tatineni M; Somani S; Rajagopal G; Luo J; Gilliland GL; Perrakis A; Joosten RP
    Protein Sci; 2018 Mar; 27(3):798-808. PubMed ID: 29168245
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Protein Data Bank Archive.
    Velankar S; Burley SK; Kurisu G; Hoch JC; Markley JL
    Methods Mol Biol; 2021; 2305():3-21. PubMed ID: 33950382
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Implementing an X-ray validation pipeline for the Protein Data Bank.
    Gore S; Velankar S; Kleywegt GJ
    Acta Crystallogr D Biol Crystallogr; 2012 Apr; 68(Pt 4):478-83. PubMed ID: 22505268
    [TBL] [Abstract][Full Text] [Related]  

  • 12. On the evolution of the quality of macromolecular models in the PDB.
    Brzezinski D; Dauter Z; Minor W; Jaskolski M
    FEBS J; 2020 Jul; 287(13):2685-2698. PubMed ID: 32311227
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Practical Approach to Protein Crystallography.
    Ilari A; Savino C
    Methods Mol Biol; 2017; 1525():47-78. PubMed ID: 27896717
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Crystallographic model validation: from diagnosis to healing.
    Richardson JS; Prisant MG; Richardson DC
    Curr Opin Struct Biol; 2013 Oct; 23(5):707-14. PubMed ID: 24064406
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Crystallographically correct but confusing presentation of structural models deposited in the Protein Data Bank.
    Dauter Z; Wlodawer A
    Acta Crystallogr D Struct Biol; 2018 Sep; 74(Pt 9):939-945. PubMed ID: 30198902
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive.
    Shao C; Yang H; Westbrook JD; Young JY; Zardecki C; Burley SK
    Structure; 2017 Mar; 25(3):458-468. PubMed ID: 28216043
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
    Joosten RP; Joosten K; Cohen SX; Vriend G; Perrakis A
    Bioinformatics; 2011 Dec; 27(24):3392-8. PubMed ID: 22034521
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The young person's guide to the PDB.
    Minor W; Dauter Z; Jaskolski M
    Postepy Biochem; 2016; 62(3):242-249. PubMed ID: 28132477
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Validation of Structures in the Protein Data Bank.
    Gore S; Sanz García E; Hendrickx PMS; Gutmanas A; Westbrook JD; Yang H; Feng Z; Baskaran K; Berrisford JM; Hudson BP; Ikegawa Y; Kobayashi N; Lawson CL; Mading S; Mak L; Mukhopadhyay A; Oldfield TJ; Patwardhan A; Peisach E; Sahni G; Sekharan MR; Sen S; Shao C; Smart OS; Ulrich EL; Yamashita R; Quesada M; Young JY; Nakamura H; Markley JL; Berman HM; Burley SK; Velankar S; Kleywegt GJ
    Structure; 2017 Dec; 25(12):1916-1927. PubMed ID: 29174494
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Validation of ligands in macromolecular structures determined by X-ray crystallography.
    Smart OS; Horský V; Gore S; Svobodová Vařeková R; Bendová V; Kleywegt GJ; Velankar S
    Acta Crystallogr D Struct Biol; 2018 Mar; 74(Pt 3):228-236. PubMed ID: 29533230
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.