These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly. Feng YJ; Liu QF; Chen MY; Liang D; Zhang P Mol Ecol Resour; 2016 Jan; 16(1):91-102. PubMed ID: 25959587 [TBL] [Abstract][Full Text] [Related]
3. Efficient Detection of Novel Nuclear Markers for Brassicaceae by Transcriptome Sequencing. Stockenhuber R; Zoller S; Shimizu-Inatsugi R; Gugerli F; Shimizu KK; Widmer A; Fischer MC PLoS One; 2015; 10(6):e0128181. PubMed ID: 26061739 [TBL] [Abstract][Full Text] [Related]
4. Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. O'Neill EM; Schwartz R; Bullock CT; Williams JS; Shaffer HB; Aguilar-Miguel X; Parra-Olea G; Weisrock DW Mol Ecol; 2013 Jan; 22(1):111-29. PubMed ID: 23062080 [TBL] [Abstract][Full Text] [Related]
5. Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics. Straub SC; Parks M; Weitemier K; Fishbein M; Cronn RC; Liston A Am J Bot; 2012 Feb; 99(2):349-64. PubMed ID: 22174336 [TBL] [Abstract][Full Text] [Related]
7. Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing. Barrow LN; Ralicki HF; Emme SA; Lemmon EM Mol Phylogenet Evol; 2014 Jun; 75():78-90. PubMed ID: 24583020 [TBL] [Abstract][Full Text] [Related]
8. A new amplicon based approach of whole mitogenome sequencing for phylogenetic and phylogeographic analysis: An example of East African white-eyes (Aves, Zosteropidae). Meimberg H; Schachtler C; Curto M; Husemann M; Habel JC Mol Phylogenet Evol; 2016 Sep; 102():74-85. PubMed ID: 27233440 [TBL] [Abstract][Full Text] [Related]
9. Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing. Rothfels CJ; Pryer KM; Li FW New Phytol; 2017 Jan; 213(1):413-429. PubMed ID: 27463214 [TBL] [Abstract][Full Text] [Related]
10. The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data. Pightling AW; Petronella N; Pagotto F BMC Microbiol; 2015 Oct; 15():224. PubMed ID: 26490433 [TBL] [Abstract][Full Text] [Related]
11. Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data. Breinholt JW; Kawahara AY Genome Biol Evol; 2013; 5(11):2082-92. PubMed ID: 24148944 [TBL] [Abstract][Full Text] [Related]
12. Information Dropout Patterns in Restriction Site Associated DNA Phylogenomics and a Comparison with Multilocus Sanger Data in a Species-Rich Moth Genus. Lee KM; Kivelä SM; Ivanov V; Hausmann A; Kaila L; Wahlberg N; Mutanen M Syst Biol; 2018 Nov; 67(6):925-939. PubMed ID: 29669013 [TBL] [Abstract][Full Text] [Related]
13. A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses. Griffin PC; Robin C; Hoffmann AA BMC Biol; 2011 Mar; 9():19. PubMed ID: 21429199 [TBL] [Abstract][Full Text] [Related]
14. A composite genome approach to identify phylogenetically informative data from next-generation sequencing. Schwartz RS; Harkins KM; Stone AC; Cartwright RA BMC Bioinformatics; 2015 Jun; 16():193. PubMed ID: 26062548 [TBL] [Abstract][Full Text] [Related]
15. Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches. Cheung F; Win J; Lang JM; Hamilton J; Vuong H; Leach JE; Kamoun S; André Lévesque C; Tisserat N; Buell CR BMC Genomics; 2008 Nov; 9():542. PubMed ID: 19014603 [TBL] [Abstract][Full Text] [Related]
17. Putting the genome in insect phylogenomics. Johnson KP Curr Opin Insect Sci; 2019 Dec; 36():111-117. PubMed ID: 31546095 [TBL] [Abstract][Full Text] [Related]
18. Next Generation-Targeted Amplicon Sequencing (NG-TAS): an optimised protocol and computational pipeline for cost-effective profiling of circulating tumour DNA. Gao M; Callari M; Beddowes E; Sammut SJ; Grzelak M; Biggs H; Jones L; Boumertit A; Linn SC; Cortes J; Oliveira M; Baird R; Chin SF; Caldas C Genome Med; 2019 Jan; 11(1):1. PubMed ID: 30609936 [TBL] [Abstract][Full Text] [Related]
19. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities. Schriefer AE; Cliften PF; Hibberd MC; Sawyer C; Brown-Kennerly V; Burcea L; Klotz E; Crosby SD; Gordon JI; Head RD J Microbiol Methods; 2018 Nov; 154():6-13. PubMed ID: 30273610 [TBL] [Abstract][Full Text] [Related]
20. Comparison of 454 pyrosequencing methods for characterizing the major histocompatibility complex of nonmodel species and the advantages of ultra deep coverage. Oomen RA; Gillett RM; Kyle CJ Mol Ecol Resour; 2013 Jan; 13(1):103-16. PubMed ID: 23095905 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]