These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

366 related articles for article (PubMed ID: 22003985)

  • 1. Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction.
    Golden BL
    Biochemistry; 2011 Nov; 50(44):9424-33. PubMed ID: 22003985
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.
    Chen JH; Yajima R; Chadalavada DM; Chase E; Bevilacqua PC; Golden BL
    Biochemistry; 2010 Aug; 49(31):6508-18. PubMed ID: 20677830
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The role of an active site Mg(2+) in HDV ribozyme self-cleavage: insights from QM/MM calculations.
    Mlýnský V; Walter NG; Šponer J; Otyepka M; Banáš P
    Phys Chem Chem Phys; 2015 Jan; 17(1):670-9. PubMed ID: 25412464
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism.
    Nakano S; Proctor DJ; Bevilacqua PC
    Biochemistry; 2001 Oct; 40(40):12022-38. PubMed ID: 11580278
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural roles of monovalent cations in the HDV ribozyme.
    Ke A; Ding F; Batchelor JD; Doudna JA
    Structure; 2007 Mar; 15(3):281-7. PubMed ID: 17355864
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape.
    Sripathi KN; Tay WW; Banáš P; Otyepka M; Šponer J; Walter NG
    RNA; 2014 Jul; 20(7):1112-28. PubMed ID: 24854621
    [TBL] [Abstract][Full Text] [Related]  

  • 7. HDV ribozymes.
    Been MD
    Curr Top Microbiol Immunol; 2006; 307():47-65. PubMed ID: 16903220
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A conformational switch controls hepatitis delta virus ribozyme catalysis.
    Ke A; Zhou K; Ding F; Cate JH; Doudna JA
    Nature; 2004 May; 429(6988):201-5. PubMed ID: 15141216
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme.
    Harris DA; Tinsley RA; Walter NG
    J Mol Biol; 2004 Aug; 341(2):389-403. PubMed ID: 15276831
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism.
    Nakano S; Cerrone AL; Bevilacqua PC
    Biochemistry; 2003 Mar; 42(10):2982-94. PubMed ID: 12627964
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Crystal structure of a hepatitis delta virus ribozyme.
    Ferré-D'Amaré AR; Zhou K; Doudna JA
    Nature; 1998 Oct; 395(6702):567-74. PubMed ID: 9783582
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis.
    Cerrone-Szakal AL; Chadalavada DM; Golden BL; Bevilacqua PC
    RNA; 2008 Sep; 14(9):1746-60. PubMed ID: 18658121
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Catalytic strategies of self-cleaving ribozymes.
    Cochrane JC; Strobel SA
    Acc Chem Res; 2008 Aug; 41(8):1027-35. PubMed ID: 18652494
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Competition between Co(NH(3)(6)3+ and inner sphere Mg2+ ions in the HDV ribozyme.
    Gong B; Chen JH; Bevilacqua PC; Golden BL; Carey PR
    Biochemistry; 2009 Dec; 48(50):11961-70. PubMed ID: 19888753
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density.
    Thaplyal P; Ganguly A; Hammes-Schiffer S; Bevilacqua PC
    Biochemistry; 2015 Mar; 54(12):2160-75. PubMed ID: 25799319
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Catalytic cleavage of cis- and trans-acting antigenomic delta ribozymes in the presence of various divalent metal ions.
    Wrzesinski J; Legiewicz M; Smólska B; Ciesiolka J
    Nucleic Acids Res; 2001 Nov; 29(21):4482-92. PubMed ID: 11691936
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Catalytic strategies of the hepatitis delta virus ribozymes.
    Shih IH; Been MD
    Annu Rev Biochem; 2002; 71():887-917. PubMed ID: 12045114
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of the catalytic Mg²⁺ ion in the hepatitis delta virus ribozyme.
    Chen J; Ganguly A; Miswan Z; Hammes-Schiffer S; Bevilacqua PC; Golden BL
    Biochemistry; 2013 Jan; 52(3):557-67. PubMed ID: 23311293
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Transition State Features in the Hepatitis Delta Virus Ribozyme Reaction Revealed by Atomic Perturbations.
    Koo SC; Lu J; Li NS; Leung E; Das SR; Harris ME; Piccirilli JA
    J Am Chem Soc; 2015 Jul; 137(28):8973-82. PubMed ID: 26125657
    [TBL] [Abstract][Full Text] [Related]  

  • 20. General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility.
    Banás P; Rulísek L; Hánosová V; Svozil D; Walter NG; Sponer J; Otyepka M
    J Phys Chem B; 2008 Sep; 112(35):11177-87. PubMed ID: 18686993
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.