These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

367 related articles for article (PubMed ID: 22003985)

  • 21. New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
    Kapral GJ; Jain S; Noeske J; Doudna JA; Richardson DC; Richardson JS
    Nucleic Acids Res; 2014 Nov; 42(20):12833-46. PubMed ID: 25326328
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis.
    Sefcikova J; Krasovska MV; Sponer J; Walter NG
    Nucleic Acids Res; 2007; 35(6):1933-46. PubMed ID: 17337436
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations.
    Krasovska MV; Sefcikova J; Spacková N; Sponer J; Walter NG
    J Mol Biol; 2005 Aug; 351(4):731-48. PubMed ID: 16045932
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM.
    Radak BK; Lee TS; Harris ME; York DM
    RNA; 2015 Sep; 21(9):1566-77. PubMed ID: 26170378
    [TBL] [Abstract][Full Text] [Related]  

  • 25. General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.
    Nakano S; Chadalavada DM; Bevilacqua PC
    Science; 2000 Feb; 287(5457):1493-7. PubMed ID: 10688799
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Magnesium dependence of the amplified conformational switch in the trans-acting hepatitis delta virus ribozyme.
    Tinsley RA; Harris DA; Walter NG
    Biochemistry; 2004 Jul; 43(28):8935-45. PubMed ID: 15248751
    [TBL] [Abstract][Full Text] [Related]  

  • 27. HDV ribozyme activity in monovalent cations.
    Perrotta AT; Been MD
    Biochemistry; 2006 Sep; 45(38):11357-65. PubMed ID: 16981696
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions.
    Suh YA; Kumar PK; Taira K; Nishikawa S
    Nucleic Acids Res; 1993 Jul; 21(14):3277-80. PubMed ID: 8341602
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions.
    Veeraraghavan N; Ganguly A; Chen JH; Bevilacqua PC; Hammes-Schiffer S; Golden BL
    Biochemistry; 2011 Apr; 50(13):2672-82. PubMed ID: 21348498
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Quantum mechanical/molecular mechanical free energy simulations of the self-cleavage reaction in the hepatitis delta virus ribozyme.
    Ganguly A; Thaplyal P; Rosta E; Bevilacqua PC; Hammes-Schiffer S
    J Am Chem Soc; 2014 Jan; 136(4):1483-96. PubMed ID: 24383543
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Long-distance communication in the HDV ribozyme: insights from molecular dynamics and experiments.
    Veeraraghavan N; Bevilacqua PC; Hammes-Schiffer S
    J Mol Biol; 2010 Sep; 402(1):278-91. PubMed ID: 20643139
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion.
    Wadkins TS; Shih I; Perrotta AT; Been MD
    J Mol Biol; 2001 Feb; 305(5):1045-55. PubMed ID: 11162113
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme.
    Chen JH; Gong B; Bevilacqua PC; Carey PR; Golden BL
    Biochemistry; 2009 Feb; 48(7):1498-507. PubMed ID: 19178151
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme.
    Thaplyal P; Ganguly A; Golden BL; Hammes-Schiffer S; Bevilacqua PC
    Biochemistry; 2013 Sep; 52(37):6499-514. PubMed ID: 24001219
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Energetic contribution of non-essential 5' sequence to catalysis in a hepatitis delta virus ribozyme.
    Shih Ih ; Been MD
    EMBO J; 2001 Sep; 20(17):4884-91. PubMed ID: 11532952
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Ribozyme cleavage of a 2,5-phosphodiester linkage: mechanism and a restricted divalent metal-ion requirement.
    Shih IH; Been MD
    RNA; 1999 Sep; 5(9):1140-8. PubMed ID: 10496215
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation.
    Veeraraghavan N; Ganguly A; Golden BL; Bevilacqua PC; Hammes-Schiffer S
    J Phys Chem B; 2011 Jun; 115(25):8346-57. PubMed ID: 21644800
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Hatchet ribozyme structure and implications for cleavage mechanism.
    Zheng L; Falschlunger C; Huang K; Mairhofer E; Yuan S; Wang J; Patel DJ; Micura R; Ren A
    Proc Natl Acad Sci U S A; 2019 May; 116(22):10783-10791. PubMed ID: 31088965
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus.
    Wadkins TS; Been MD
    Cell Mol Life Sci; 2002 Jan; 59(1):112-25. PubMed ID: 11846024
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Recent advances in the elucidation of the mechanisms of action of ribozymes.
    Takagi Y; Warashina M; Stec WJ; Yoshinari K; Taira K
    Nucleic Acids Res; 2001 May; 29(9):1815-34. PubMed ID: 11328865
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 19.