BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 22018332)

  • 1. High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing.
    Sims D; Mendes-Pereira AM; Frankum J; Burgess D; Cerone MA; Lombardelli C; Mitsopoulos C; Hakas J; Murugaesu N; Isacke CM; Fenwick K; Assiotis I; Kozarewa I; Zvelebil M; Ashworth A; Lord CJ
    Genome Biol; 2011 Oct; 12(10):R104. PubMed ID: 22018332
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Target discovery screens using pooled shRNA libraries and next-generation sequencing: A model workflow and analytical algorithm.
    Schaefer C; Mallela N; Seggewiß J; Lechtape B; Omran H; Dirksen U; Korsching E; Potratz J
    PLoS One; 2018; 13(1):e0191570. PubMed ID: 29385199
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Criteria for effective design, construction, and gene knockdown by shRNA vectors.
    Taxman DJ; Livingstone LR; Zhang J; Conti BJ; Iocca HA; Williams KL; Lich JD; Ting JP; Reed W
    BMC Biotechnol; 2006 Jan; 6():7. PubMed ID: 16433925
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Comprehensive Protocol Resource for Performing Pooled shRNA and CRISPR Screens.
    Cluse LA; Nikolic I; Knight D; Madhamshettiwar PB; Luu J; Cowley KJ; Semple T; Arnau GM; Shortt J; Johnstone RW; Simpson KJ
    Methods Mol Biol; 2018; 1725():201-227. PubMed ID: 29322420
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pooled Generation of Lentiviral Tetracycline-Regulated microRNA Embedded Short Hairpin RNA Libraries.
    Adams FF; Hoffmann T; Zuber J; Heckl D; Schambach A; Schwarzer A
    Hum Gene Ther Methods; 2018 Feb; 29(1):16-29. PubMed ID: 29325442
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DNA vector-based RNA interference to study gene function in cancer.
    Stovall DB; Wan M; Zhang Q; Dubey P; Sui G
    J Vis Exp; 2012 Jun; (64):e4129. PubMed ID: 22710444
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Development of methods for quantitative comparison of pooled shRNAs by mass sequencing.
    Hoshiyama H; Tang J; Batten K; Xiao G; Rouillard JM; Shay JW; Xie Y; Wright WE
    J Biomol Screen; 2012 Feb; 17(2):258-65. PubMed ID: 21956173
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pooled shRNA screenings: computational analysis.
    Yu J; Putcha P; Califano A; Silva JM
    Methods Mol Biol; 2013; 980():371-84. PubMed ID: 23359167
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MISSION LentiPlex pooled shRNA library screening in mammalian cells.
    Coussens MJ; Corman C; Fischer AL; Sago J; Swarthout J
    J Vis Exp; 2011 Dec; (58):. PubMed ID: 22215108
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Disturbance of the microRNA pathway by commonly used lentiviral shRNA libraries limits the application for screening host factors involved in hepatitis C virus infection.
    Pan Q; de Ruiter PE; von Eije KJ; Smits R; Kwekkeboom J; Tilanus HW; Berkhout B; Janssen HL; van der Laan LJ
    FEBS Lett; 2011 Apr; 585(7):1025-30. PubMed ID: 21376045
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Next-generation libraries for robust RNA interference-based genome-wide screens.
    Kampmann M; Horlbeck MA; Chen Y; Tsai JC; Bassik MC; Gilbert LA; Villalta JE; Kwon SC; Chang H; Kim VN; Weissman JS
    Proc Natl Acad Sci U S A; 2015 Jun; 112(26):E3384-91. PubMed ID: 26080438
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generation of a pooled shRNA library for functional genomics screens.
    Papadopoulos D; Ade CP; Eilers M
    STAR Protoc; 2022 Mar; 3(1):101183. PubMed ID: 35243374
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Enzymatic production of RNAi libraries from cDNAs.
    Shirane D; Sugao K; Namiki S; Tanabe M; Iino M; Hirose K
    Nat Genet; 2004 Feb; 36(2):190-6. PubMed ID: 14704669
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Pooled shRNA screenings: experimental approach.
    Rodriguez-Barrueco R; Marshall N; Silva JM
    Methods Mol Biol; 2013; 980():353-70. PubMed ID: 23359166
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Enzymatic production of RNAi libraries from cDNAs and high-throughput selection of effective shRNA expression constructs.
    Sugao K; Hirose K
    Methods Mol Biol; 2011; 729():123-39. PubMed ID: 21365487
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A shRNA library constructed through the generation of loop-stem-loop DNA.
    Nishikawa Y; Sugiyama T
    J Gene Med; 2010 Nov; 12(11):927-33. PubMed ID: 21105152
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Pooled lentiviral shRNA screening for functional genomics in mammalian cells.
    Blakely K; Ketela T; Moffat J
    Methods Mol Biol; 2011; 781():161-82. PubMed ID: 21877282
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Plasmid-based shRNA lentiviral particle production for RNAi applications.
    Shum D; Djaballah H
    J Biomol Screen; 2014 Oct; 19(9):1309-13. PubMed ID: 24939963
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-scale loss-of-function screening with a lentiviral RNAi library.
    Root DE; Hacohen N; Hahn WC; Lander ES; Sabatini DM
    Nat Methods; 2006 Sep; 3(9):715-9. PubMed ID: 16929317
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Design of lentivirally expressed siRNAs.
    Liu YP; Berkhout B
    Methods Mol Biol; 2013; 942():233-57. PubMed ID: 23027055
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.