These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

99 related articles for article (PubMed ID: 22021898)

  • 1. Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.
    Finotello F; Lavezzo E; Fontana P; Peruzzo D; Albiero A; Barzon L; Falda M; Di Camillo B; Toppo S
    Brief Bioinform; 2012 May; 13(3):269-80. PubMed ID: 22021898
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Characterizing and interpreting genetic variation from personal genome sequencing.
    Johansson AC; Feuk L
    Methods Mol Biol; 2012; 838():343-67. PubMed ID: 22228021
    [TBL] [Abstract][Full Text] [Related]  

  • 3. 6-10× pyrosequencing is a practical approach for whole prokaryote genome studies.
    Li J; Jiang J; Leung FC
    Gene; 2012 Feb; 494(1):57-64. PubMed ID: 22192914
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Whole genome assembly from 454 sequencing output via modified DNA graph concept.
    Blazewicz J; Bryja M; Figlerowicz M; Gawron P; Kasprzak M; Kirton E; Platt D; Przybytek J; Swiercz A; Szajkowski L
    Comput Biol Chem; 2009 Jun; 33(3):224-30. PubMed ID: 19477687
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology.
    Schwientek P; Szczepanowski R; Rückert C; Stoye J; Pühler A
    J Biotechnol; 2011 Aug; 155(1):68-77. PubMed ID: 21536083
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.
    Quinn NL; Levenkova N; Chow W; Bouffard P; Boroevich KA; Knight JR; Jarvie TP; Lubieniecki KP; Desany BA; Koop BF; Harkins TT; Davidson WS
    BMC Genomics; 2008 Aug; 9():404. PubMed ID: 18755037
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.
    Cerdeira LT; Carneiro AR; Ramos RT; de Almeida SS; D'Afonseca V; Schneider MP; Baumbach J; Tauch A; McCulloch JA; Azevedo VA; Silva A
    J Microbiol Methods; 2011 Aug; 86(2):218-23. PubMed ID: 21620904
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Advances in plant genome sequencing.
    Hamilton JP; Buell CR
    Plant J; 2012 Apr; 70(1):177-90. PubMed ID: 22449051
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Benchmarking of next and third generation sequencing technologies and their associated algorithms for
    Gavrielatos M; Kyriakidis K; Spandidos DA; Michalopoulos I
    Mol Med Rep; 2021 Apr; 23(4):. PubMed ID: 33537807
    [TBL] [Abstract][Full Text] [Related]  

  • 10. De novo sequencing of plant genomes using second-generation technologies.
    Imelfort M; Edwards D
    Brief Bioinform; 2009 Nov; 10(6):609-18. PubMed ID: 19933209
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.
    Gibbons JG; Janson EM; Hittinger CT; Johnston M; Abbot P; Rokas A
    Mol Biol Evol; 2009 Dec; 26(12):2731-44. PubMed ID: 19706727
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Whole-genome re-sequencing.
    Bentley DR
    Curr Opin Genet Dev; 2006 Dec; 16(6):545-52. PubMed ID: 17055251
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing.
    Wendl MC
    Bull Math Biol; 2006 Jan; 68(1):179-96. PubMed ID: 16794926
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Whole genome sequencing.
    Ng PC; Kirkness EF
    Methods Mol Biol; 2010; 628():215-26. PubMed ID: 20238084
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EDAR: an efficient error detection and removal algorithm for next generation sequencing data.
    Zhao X; Palmer LE; Bolanos R; Mircean C; Fasulo D; Wittenberg GM
    J Comput Biol; 2010 Nov; 17(11):1549-60. PubMed ID: 20973743
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Theory and Practice of Genome Sequence Assembly.
    Simpson JT; Pop M
    Annu Rev Genomics Hum Genet; 2015; 16():153-72. PubMed ID: 25939056
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reptile: representative tiling for short read error correction.
    Yang X; Dorman KS; Aluru S
    Bioinformatics; 2010 Oct; 26(20):2526-33. PubMed ID: 20834037
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data.
    Fan H; Ives AR; Surget-Groba Y; Cannon CH
    BMC Genomics; 2015 Jul; 16(1):522. PubMed ID: 26169061
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparing de novo genome assembly: the long and short of it.
    Narzisi G; Mishra B
    PLoS One; 2011 Apr; 6(4):e19175. PubMed ID: 21559467
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ConPADE: genome assembly ploidy estimation from next-generation sequencing data.
    Margarido GR; Heckerman D
    PLoS Comput Biol; 2015 Apr; 11(4):e1004229. PubMed ID: 25880203
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.