184 related articles for article (PubMed ID: 22025481)
1. Graph accordance of next-generation sequence assemblies.
Yao G; Ye L; Gao H; Minx P; Warren WC; Weinstock GM
Bioinformatics; 2012 Jan; 28(1):13-6. PubMed ID: 22025481
[TBL] [Abstract][Full Text] [Related]
2. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
[TBL] [Abstract][Full Text] [Related]
3. SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
Dayarian A; Michael TP; Sengupta AM
BMC Bioinformatics; 2010 Jun; 11():345. PubMed ID: 20576136
[TBL] [Abstract][Full Text] [Related]
4. GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R; Vezzi F; Scalabrin S; Arvestad L; Policriti A
BMC Bioinformatics; 2013; 14 Suppl 7(Suppl 7):S6. PubMed ID: 23815503
[TBL] [Abstract][Full Text] [Related]
5. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
Kosugi S; Hirakawa H; Tabata S
Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
[TBL] [Abstract][Full Text] [Related]
6. Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers.
Medvedev P; Pham S; Chaisson M; Tesler G; Pevzner P
J Comput Biol; 2011 Nov; 18(11):1625-34. PubMed ID: 21999285
[TBL] [Abstract][Full Text] [Related]
7. Finishing bacterial genome assemblies with Mix.
Soueidan H; Maurier F; Groppi A; Sirand-Pugnet P; Tardy F; Citti C; Dupuy V; Nikolski M
BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S16. PubMed ID: 24564706
[TBL] [Abstract][Full Text] [Related]
8. ScaffMatch: scaffolding algorithm based on maximum weight matching.
Mandric I; Zelikovsky A
Bioinformatics; 2015 Aug; 31(16):2632-8. PubMed ID: 25890305
[TBL] [Abstract][Full Text] [Related]
9. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.
Wetzel J; Kingsford C; Pop M
BMC Bioinformatics; 2011 Apr; 12():95. PubMed ID: 21486487
[TBL] [Abstract][Full Text] [Related]
10. Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis.
Sato K; Kuroki Y; Kumita W; Fujiyama A; Toyoda A; Kawai J; Iriki A; Sasaki E; Okano H; Sakakibara Y
Sci Rep; 2015 Nov; 5():16894. PubMed ID: 26586576
[TBL] [Abstract][Full Text] [Related]
11. SEQuel: improving the accuracy of genome assemblies.
Ronen R; Boucher C; Chitsaz H; Pevzner P
Bioinformatics; 2012 Jun; 28(12):i188-96. PubMed ID: 22689760
[TBL] [Abstract][Full Text] [Related]
12. Safe and Complete Contig Assembly Through Omnitigs.
Tomescu AI; Medvedev P
J Comput Biol; 2017 Jun; 24(6):590-602. PubMed ID: 27749096
[TBL] [Abstract][Full Text] [Related]
13. LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.
Xu GC; Xu TJ; Zhu R; Zhang Y; Li SQ; Wang HW; Li JT
Gigascience; 2019 Jan; 8(1):. PubMed ID: 30576505
[TBL] [Abstract][Full Text] [Related]
14. LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads.
El-Metwally S; Zakaria M; Hamza T
Bioinformatics; 2016 Nov; 32(21):3215-3223. PubMed ID: 27412092
[TBL] [Abstract][Full Text] [Related]
15. Pasa: leveraging population pangenome graph to scaffold prokaryote genome assemblies.
Do VH; Nguyen SH; Le DQ; Nguyen TT; Nguyen CH; Ho TH; Vo NS; Nguyen T; Nguyen HA; Cao MD
Nucleic Acids Res; 2024 Feb; 52(3):e15. PubMed ID: 38084888
[TBL] [Abstract][Full Text] [Related]
16. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
17. A tool for analyzing mate pairs in assemblies (TAMPA).
Dew IM; Walenz B; Sutton G
J Comput Biol; 2005 Jun; 12(5):497-513. PubMed ID: 15952874
[TBL] [Abstract][Full Text] [Related]
18. Scaffolding low quality genomes using orthologous protein sequences.
Li YI; Copley RR
Bioinformatics; 2013 Jan; 29(2):160-5. PubMed ID: 23162087
[TBL] [Abstract][Full Text] [Related]
19. Assembling short reads from jumping libraries with large insert sizes.
Vasilinetc I; Prjibelski AD; Gurevich A; Korobeynikov A; Pevzner PA
Bioinformatics; 2015 Oct; 31(20):3262-8. PubMed ID: 26040456
[TBL] [Abstract][Full Text] [Related]
20. A scaffold analysis tool using mate-pair information in genome sequencing.
Kim PG; Cho HG; Park K
J Biomed Biotechnol; 2008; 2008():675741. PubMed ID: 18414585
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
