194 related articles for article (PubMed ID: 22032405)
1. A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF.
Zhao L; Liu L; Leng W; Wei C; Jin Q
BMC Genomics; 2011 Oct; 12():528. PubMed ID: 22032405
[TBL] [Abstract][Full Text] [Related]
2. Subproteomic tools to increase genome annotation complexity.
Wei C; Peng J; Xiong Z; Yang J; Wang J; Jin Q
Proteomics; 2008 Oct; 8(20):4209-13. PubMed ID: 18814329
[TBL] [Abstract][Full Text] [Related]
3. Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination.
Cervantes-Rivera R; Tronnet S; Puhar A
BMC Genomics; 2020 Apr; 21(1):285. PubMed ID: 32252626
[TBL] [Abstract][Full Text] [Related]
4. Proteogenomic Methods to Improve Genome Annotation.
Datta KK; Madugundu AK; Gowda H
Methods Mol Biol; 2016; 1410():77-89. PubMed ID: 26867739
[TBL] [Abstract][Full Text] [Related]
5. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
6. Proteogenomic mapping as a complementary method to perform genome annotation.
Jaffe JD; Berg HC; Church GM
Proteomics; 2004 Jan; 4(1):59-77. PubMed ID: 14730672
[TBL] [Abstract][Full Text] [Related]
7. High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.
Christie-Oleza JA; Miotello G; Armengaud J
BMC Genomics; 2012 Feb; 13():73. PubMed ID: 22336032
[TBL] [Abstract][Full Text] [Related]
8. Functional Annotation and Curation of Hypothetical Proteins Present in A Newly Emerged Serotype 1c of
Sen T; Verma NK
Genes (Basel); 2020 Mar; 11(3):. PubMed ID: 32210046
[No Abstract] [Full Text] [Related]
9. Comparative omics-driven genome annotation refinement: application across Yersiniae.
Schrimpe-Rutledge AC; Jones MB; Chauhan S; Purvine SO; Sanford JA; Monroe ME; Brewer HM; Payne SH; Ansong C; Frank BC; Smith RD; Peterson SN; Motin VL; Adkins JN
PLoS One; 2012; 7(3):e33903. PubMed ID: 22479471
[TBL] [Abstract][Full Text] [Related]
10. Proteome driven re-evaluation and functional annotation of the Streptococcus pyogenes SF370 genome.
Okamoto A; Yamada K
BMC Microbiol; 2011 Nov; 11():249. PubMed ID: 22070424
[TBL] [Abstract][Full Text] [Related]
11. Gene model detection using mass spectrometry.
Nanduri B; Wang N; Lawrence ML; Bridges SM; Burgess SC
Methods Mol Biol; 2010; 604():137-44. PubMed ID: 20013369
[TBL] [Abstract][Full Text] [Related]
12. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK; Cheetham SW; Cattenoz PB; Clark MB; Amaral PP; Taft RJ; Wilhelm D; Dinger ME; Mattick JS
Bioinformatics; 2012 Dec; 28(23):3042-50. PubMed ID: 23044541
[TBL] [Abstract][Full Text] [Related]
13. [Comparative proteomics research on removing of large invasive plasmid pINV of Shigella flexneri 2a strain 2457T].
Li MZ; Ying TY; Wang HL; Zhang BC; Feng EL
Wei Sheng Wu Xue Bao; 2005 Jun; 45(3):410-4. PubMed ID: 15989237
[TBL] [Abstract][Full Text] [Related]
14. Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host.
Parajuli P; Rajput MI; Verma NK
BMC Microbiol; 2019 Apr; 19(1):86. PubMed ID: 31035948
[TBL] [Abstract][Full Text] [Related]
15. Identification and characterization of simple sequence repeats in the genomes of Shigella species.
Yang J; Wang J; Chen L; Yu J; Dong J; Yao ZJ; Shen Y; Jin Q; Chen R
Gene; 2003 Dec; 322():85-92. PubMed ID: 14644500
[TBL] [Abstract][Full Text] [Related]
16. Immunoproteome analysis of soluble and membrane proteins of Shigella flexneri 2457T.
Jennison AV; Raqib R; Verma NK
World J Gastroenterol; 2006 Nov; 12(41):6683-8. PubMed ID: 17075984
[TBL] [Abstract][Full Text] [Related]
17. Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation.
Kumar D; Yadav AK; Jia X; Mulvenna J; Dash D
Mol Cell Proteomics; 2016 Jan; 15(1):329-39. PubMed ID: 26560066
[TBL] [Abstract][Full Text] [Related]
18. Two promoters and two translation start sites control the expression of the Shigella flexneri outer membrane protease IcsP.
Hensley CT; Kamneva OK; Levy KM; Labahn SK; Africa LA; Wing HJ
Arch Microbiol; 2011 Apr; 193(4):263-74. PubMed ID: 21225241
[TBL] [Abstract][Full Text] [Related]
19. REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.
Ndah E; Jonckheere V; Giess A; Valen E; Menschaert G; Van Damme P
Nucleic Acids Res; 2017 Nov; 45(20):e168. PubMed ID: 28977509
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]
