375 related articles for article (PubMed ID: 22032724)
1. Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.
Ha KC; Lalonde E; Li L; Cavallone L; Natrajan R; Lambros MB; Mitsopoulos C; Hakas J; Kozarewa I; Fenwick K; Lord CJ; Ashworth A; Vincent-Salomon A; Basik M; Reis-Filho JS; Majewski J; Foulkes WD
BMC Med Genomics; 2011 Oct; 4():75. PubMed ID: 22032724
[TBL] [Abstract][Full Text] [Related]
2. Gene Fusion Detection and Characterization in Long-Read Cancer Transcriptome Sequencing Data with FusionSeeker.
Chen Y; Wang Y; Chen W; Tan Z; Song Y; ; Chen H; Chong Z
Cancer Res; 2023 Jan; 83(1):28-33. PubMed ID: 36318117
[TBL] [Abstract][Full Text] [Related]
3. Identification of fusion genes in breast cancer by paired-end RNA-sequencing.
Edgren H; Murumagi A; Kangaspeska S; Nicorici D; Hongisto V; Kleivi K; Rye IH; Nyberg S; Wolf M; Borresen-Dale AL; Kallioniemi O
Genome Biol; 2011; 12(1):R6. PubMed ID: 21247443
[TBL] [Abstract][Full Text] [Related]
4. Recurrent fusion transcripts detected by whole-transcriptome sequencing of 120 primary breast cancer samples.
Kim J; Kim S; Ko S; In YH; Moon HG; Ahn SK; Kim MK; Lee M; Hwang JH; Ju YS; Kim JI; Noh DY; Kim S; Park JH; Rhee H; Kim S; Han W
Genes Chromosomes Cancer; 2015 Nov; 54(11):681-91. PubMed ID: 26227178
[TBL] [Abstract][Full Text] [Related]
5. Characterization of the genomic features and expressed fusion genes in micropapillary carcinomas of the breast.
Natrajan R; Wilkerson PM; Marchiò C; Piscuoglio S; Ng CK; Wai P; Lambros MB; Samartzis EP; Dedes KJ; Frankum J; Bajrami I; Kopec A; Mackay A; A'hern R; Fenwick K; Kozarewa I; Hakas J; Mitsopoulos C; Hardisson D; Lord CJ; Kumar-Sinha C; Ashworth A; Weigelt B; Sapino A; Chinnaiyan AM; Maher CA; Reis-Filho JS
J Pathol; 2014 Apr; 232(5):553-65. PubMed ID: 24395524
[TBL] [Abstract][Full Text] [Related]
6. RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.
Hofvander J; Tayebwa J; Nilsson J; Magnusson L; Brosjö O; Larsson O; von Steyern FV; Domanski HA; Mandahl N; Mertens F
Lab Invest; 2015 Jun; 95(6):603-9. PubMed ID: 25867764
[TBL] [Abstract][Full Text] [Related]
7. De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance.
Mittal VK; McDonald JF
BMC Med Genomics; 2017 Aug; 10(1):53. PubMed ID: 28851357
[TBL] [Abstract][Full Text] [Related]
8. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
Liu C; Ma J; Chang CJ; Zhou X
BMC Bioinformatics; 2013 Jun; 14():193. PubMed ID: 23768108
[TBL] [Abstract][Full Text] [Related]
9. Antioxydation And Cell Migration Genes Are Identified as Potential Therapeutic Targets in Basal-Like and BRCA1 Mutated Breast Cancer Cell Lines.
Privat M; Rudewicz J; Sonnier N; Tamisier C; Ponelle-Chachuat F; Bignon YJ
Int J Med Sci; 2018; 15(1):46-58. PubMed ID: 29333087
[TBL] [Abstract][Full Text] [Related]
10. Identification of novel fusion transcripts in multiple myeloma.
Lin M; Lee PL; Chiu L; Chua C; Ban KHK; Lin AHF; Chan ZL; Chung TH; Yan B; Chng WJ
J Clin Pathol; 2018 Aug; 71(8):708-712. PubMed ID: 29453220
[TBL] [Abstract][Full Text] [Related]
11. Chimeric transcript discovery by paired-end transcriptome sequencing.
Maher CA; Palanisamy N; Brenner JC; Cao X; Kalyana-Sundaram S; Luo S; Khrebtukova I; Barrette TR; Grasso C; Yu J; Lonigro RJ; Schroth G; Kumar-Sinha C; Chinnaiyan AM
Proc Natl Acad Sci U S A; 2009 Jul; 106(30):12353-8. PubMed ID: 19592507
[TBL] [Abstract][Full Text] [Related]
12. RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.
Sakarya O; Breu H; Radovich M; Chen Y; Wang YN; Barbacioru C; Utiramerur S; Whitley PP; Brockman JP; Vatta P; Zhang Z; Popescu L; Muller MW; Kudlingar V; Garg N; Li CY; Kong BS; Bodeau JP; Nutter RC; Gu J; Bramlett KS; Ichikawa JK; Hyland FC; Siddiqui AS
PLoS Comput Biol; 2012; 8(4):e1002464. PubMed ID: 22496636
[TBL] [Abstract][Full Text] [Related]
13. Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes.
Massink MP; Kooi IE; van Mil SE; Jordanova ES; Ameziane N; Dorsman JC; van Beek DM; van der Voorn JP; Sie D; Ylstra B; van Deurzen CH; Martens JW; Smid M; Sieuwerts AM; de Weerd V; Foekens JA; van den Ouweland AM; van Dyk E; Nederlof PM; Waisfisz Q; Meijers-Heijboer H
Mol Oncol; 2015 Apr; 9(4):877-88. PubMed ID: 25616998
[TBL] [Abstract][Full Text] [Related]
14. Recurrent R-spondin fusions in colon cancer.
Seshagiri S; Stawiski EW; Durinck S; Modrusan Z; Storm EE; Conboy CB; Chaudhuri S; Guan Y; Janakiraman V; Jaiswal BS; Guillory J; Ha C; Dijkgraaf GJ; Stinson J; Gnad F; Huntley MA; Degenhardt JD; Haverty PM; Bourgon R; Wang W; Koeppen H; Gentleman R; Starr TK; Zhang Z; Largaespada DA; Wu TD; de Sauvage FJ
Nature; 2012 Aug; 488(7413):660-4. PubMed ID: 22895193
[TBL] [Abstract][Full Text] [Related]
15. Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer.
Kalyana-Sundaram S; Shankar S; Deroo S; Iyer MK; Palanisamy N; Chinnaiyan AM; Kumar-Sinha C
Neoplasia; 2012 Aug; 14(8):702-8. PubMed ID: 22952423
[TBL] [Abstract][Full Text] [Related]
16. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
McPherson A; Hormozdiari F; Zayed A; Giuliany R; Ha G; Sun MG; Griffith M; Heravi Moussavi A; Senz J; Melnyk N; Pacheco M; Marra MA; Hirst M; Nielsen TO; Sahinalp SC; Huntsman D; Shah SP
PLoS Comput Biol; 2011 May; 7(5):e1001138. PubMed ID: 21625565
[TBL] [Abstract][Full Text] [Related]
17. Cross-species comparison of aCGH data from mouse and human BRCA1- and BRCA2-mutated breast cancers.
Holstege H; van Beers E; Velds A; Liu X; Joosse SA; Klarenbeek S; Schut E; Kerkhoven R; Klijn CN; Wessels LF; Nederlof PM; Jonkers J
BMC Cancer; 2010 Aug; 10():455. PubMed ID: 20735817
[TBL] [Abstract][Full Text] [Related]
18. Dissecting the heterogeneity and tumorigenesis of BRCA1 deficient mammary tumors via single cell RNA sequencing.
Sun H; Zeng J; Miao Z; Lei KC; Huang C; Hu L; Su SM; Chan UI; Miao K; Zhang X; Zhang A; Guo S; Chen S; Meng Y; Deng M; Hao W; Lei H; Lin Y; Yang Z; Tang D; Wong KH; Zhang XD; Xu X; Deng CX
Theranostics; 2021; 11(20):9967-9987. PubMed ID: 34815798
[No Abstract] [Full Text] [Related]
19. Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.
Kinsella M; Harismendy O; Nakano M; Frazer KA; Bafna V
Bioinformatics; 2011 Apr; 27(8):1068-75. PubMed ID: 21330288
[TBL] [Abstract][Full Text] [Related]
20. RNA Sequencing in B-Cell Lymphomas.
Huang DW; Dawood M; Johnson CA; Schmitz R
Methods Mol Biol; 2019; 1956():283-303. PubMed ID: 30779040
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]