BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

241 related articles for article (PubMed ID: 22034360)

  • 1. Sequence Surveyor: leveraging overview for scalable genomic alignment visualization.
    Albers D; Dewey C; Gleicher M
    IEEE Trans Vis Comput Graph; 2011 Dec; 17(12):2392-401. PubMed ID: 22034360
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
    Uchiyama I; Higuchi T; Kobayashi I
    BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VISTA family of computational tools for comparative analysis of DNA sequences and whole genomes.
    Dubchak I; Ryaboy DV
    Methods Mol Biol; 2006; 338():69-89. PubMed ID: 16888351
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sybil: methods and software for multiple genome comparison and visualization.
    Crabtree J; Angiuoli SV; Wortman JR; White OR
    Methods Mol Biol; 2007; 408():93-108. PubMed ID: 18314579
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PLATCOM: a Platform for Computational Comparative Genomics.
    Choi K; Ma Y; Choi JH; Kim S
    Bioinformatics; 2005 May; 21(10):2514-6. PubMed ID: 15731206
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hierarchical aggregation for information visualization: overview, techniques, and design guidelines.
    Elmqvist N; Fekete JD
    IEEE Trans Vis Comput Graph; 2010; 16(3):439-54. PubMed ID: 20224139
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.
    Shih AC; Lee DT; Peng CL; Wu YW
    BMC Bioinformatics; 2007 Feb; 8():63. PubMed ID: 17319966
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs.
    Paten B; Herrero J; Beal K; Fitzgerald S; Birney E
    Genome Res; 2008 Nov; 18(11):1814-28. PubMed ID: 18849524
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ABC: software for interactive browsing of genomic multiple sequence alignment data.
    Cooper GM; Singaravelu SA; Sidow A
    BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology.
    Hallin PF; Binnewies TT; Ussery DW
    Mol Biosyst; 2008 May; 4(5):363-71. PubMed ID: 18414733
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VISSA: a program to visualize structural features from structure sequence alignment.
    Li W; Godzik A
    Bioinformatics; 2006 Apr; 22(7):887-8. PubMed ID: 16434438
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SNP-VISTA: an interactive SNP visualization tool.
    Shah N; Teplitsky MV; Minovitsky S; Pennacchio LA; Hugenholtz P; Hamann B; Dubchak IL
    BMC Bioinformatics; 2005 Dec; 6():292. PubMed ID: 16336665
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.
    Faith JJ; Olson AJ; Gardner TS; Sachidanandam R
    BMC Bioinformatics; 2007 Sep; 8():344. PubMed ID: 17877794
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.
    Glasner JD; Rusch M; Liss P; Plunkett G; Cabot EL; Darling A; Anderson BD; Infield-Harm P; Gilson MC; Perna NT
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D41-5. PubMed ID: 16381899
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Dcode.org anthology of comparative genomic tools.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The UCSC Genome Browser Database: update 2006.
    Hinrichs AS; Karolchik D; Baertsch R; Barber GP; Bejerano G; Clawson H; Diekhans M; Furey TS; Harte RA; Hsu F; Hillman-Jackson J; Kuhn RM; Pedersen JS; Pohl A; Raney BJ; Rosenbloom KR; Siepel A; Smith KE; Sugnet CW; Sultan-Qurraie A; Thomas DJ; Trumbower H; Weber RJ; Weirauch M; Zweig AS; Haussler D; Kent WJ
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D590-8. PubMed ID: 16381938
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GPAC-genome presence/absence compiler: a web application to comparatively visualize multiple genome-level changes.
    Noll A; Grundmann N; Churakov G; Brosius J; Makałowski W; Schmitz J
    Mol Biol Evol; 2015 Jan; 32(1):275-86. PubMed ID: 25261406
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SeqTools: visual tools for manual analysis of sequence alignments.
    Barson G; Griffiths E
    BMC Res Notes; 2016 Jan; 9():39. PubMed ID: 26801397
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Gremlin: an interactive visualization model for analyzing genomic rearrangements.
    O'Brien TM; Ritz AM; Raphael BJ; Laidlaw DH
    IEEE Trans Vis Comput Graph; 2010; 16(6):918-26. PubMed ID: 20975128
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MolliGen, a database dedicated to the comparative genomics of Mollicutes.
    Barré A; de Daruvar A; Blanchard A
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D307-10. PubMed ID: 14681420
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.