470 related articles for article (PubMed ID: 22034872)
1. Enhanced peptide quantification using spectral count clustering and cluster abundance.
Lee S; Kwon MS; Lee HJ; Paik YK; Tang H; Lee JK; Park T
BMC Bioinformatics; 2011 Oct; 12():423. PubMed ID: 22034872
[TBL] [Abstract][Full Text] [Related]
2. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
LaMarche BL; Crowell KL; Jaitly N; Petyuk VA; Shah AR; Polpitiya AD; Sandoval JD; Kiebel GR; Monroe ME; Callister SJ; Metz TO; Anderson GA; Smith RD
BMC Bioinformatics; 2013 Feb; 14():49. PubMed ID: 23398735
[TBL] [Abstract][Full Text] [Related]
3. Constructing a Tandem Mass Spectral Library for Forensic Ricin Identification.
O'Bryon I; Tucker AE; Kaiser BLD; Wahl KL; Merkley ED
J Proteome Res; 2019 Nov; 18(11):3926-3935. PubMed ID: 31566388
[TBL] [Abstract][Full Text] [Related]
4. Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.
Cho JY; Lee HJ; Jeong SK; Paik YK
J Proteome Res; 2017 Dec; 16(12):4435-4445. PubMed ID: 28299940
[TBL] [Abstract][Full Text] [Related]
5. Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.
Barkovits K; Pacharra S; Pfeiffer K; Steinbach S; Eisenacher M; Marcus K; Uszkoreit J
Mol Cell Proteomics; 2020 Jan; 19(1):181-197. PubMed ID: 31699904
[TBL] [Abstract][Full Text] [Related]
6. A peptide-retrieval strategy enables significant improvement of quantitative performance without compromising confidence of identification.
Tu C; Shen S; Sheng Q; Shyr Y; Qu J
J Proteomics; 2017 Jan; 152():276-282. PubMed ID: 27903464
[TBL] [Abstract][Full Text] [Related]
7. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.
Braisted JC; Kuntumalla S; Vogel C; Marcotte EM; Rodrigues AR; Wang R; Huang ST; Ferlanti ES; Saeed AI; Fleischmann RD; Peterson SN; Pieper R
BMC Bioinformatics; 2008 Dec; 9():529. PubMed ID: 19068132
[TBL] [Abstract][Full Text] [Related]
8. IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation.
Tsou CC; Tsai CF; Tsui YH; Sudhir PR; Wang YT; Chen YJ; Chen JY; Sung TY; Hsu WL
Mol Cell Proteomics; 2010 Jan; 9(1):131-44. PubMed ID: 19752006
[TBL] [Abstract][Full Text] [Related]
9. Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences.
Zhou JY; Schepmoes AA; Zhang X; Moore RJ; Monroe ME; Lee JH; Camp DG; Smith RD; Qian WJ
J Proteome Res; 2010 Nov; 9(11):5698-704. PubMed ID: 20812748
[TBL] [Abstract][Full Text] [Related]
10. msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.
Wang L; Li S; Tang H
J Proteome Res; 2019 Jan; 18(1):147-158. PubMed ID: 30511858
[TBL] [Abstract][Full Text] [Related]
11. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
Madsen JA; Xu H; Robinson MR; Horton AP; Shaw JB; Giles DK; Kaoud TS; Dalby KN; Trent MS; Brodbelt JS
Mol Cell Proteomics; 2013 Sep; 12(9):2604-14. PubMed ID: 23695934
[TBL] [Abstract][Full Text] [Related]
12. Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
Tu C; Sheng Q; Li J; Ma D; Shen X; Wang X; Shyr Y; Yi Z; Qu J
J Proteome Res; 2015 Nov; 14(11):4662-73. PubMed ID: 26390080
[TBL] [Abstract][Full Text] [Related]
13. Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra.
Shen J; Pagala VR; Breuer AM; Peng J; Bin Ma ; Wang X
J Proteome Res; 2018 Sep; 17(9):3325-3331. PubMed ID: 30096983
[TBL] [Abstract][Full Text] [Related]
14. MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides.
Yang X; Lazar IM
BMC Cancer; 2009 Mar; 9():96. PubMed ID: 19327145
[TBL] [Abstract][Full Text] [Related]
15. Development and validation of a spectral library searching method for peptide identification from MS/MS.
Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
[TBL] [Abstract][Full Text] [Related]
16. DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs.
Rieder V; Blank-Landeshammer B; Stuhr M; Schell T; Biß K; Kollipara L; Meyer A; Pfenninger M; Westphal H; Sickmann A; Rahnenführer J
BMC Bioinformatics; 2017 Mar; 18(1):148. PubMed ID: 28253837
[TBL] [Abstract][Full Text] [Related]
17. i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.
Wada K; Ogiwara A; Nagasaka K; Tanaka N; Komatsu Y
Rapid Commun Mass Spectrom; 2011 Apr; 25(7):960-8. PubMed ID: 21416533
[TBL] [Abstract][Full Text] [Related]
18. Using SEQUEST with theoretically complete sequence databases.
Sadygov RG
J Am Soc Mass Spectrom; 2015 Nov; 26(11):1858-64. PubMed ID: 26238326
[TBL] [Abstract][Full Text] [Related]
19. Preprocessing Tandem Mass Spectra Using Genetic Programming for Peptide Identification.
Azari S; Xue B; Zhang M; Peng L
J Am Soc Mass Spectrom; 2019 Jul; 30(7):1294-1307. PubMed ID: 31025295
[TBL] [Abstract][Full Text] [Related]
20. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.
Dworzanski JP; Snyder AP; Chen R; Zhang H; Wishart D; Li L
Anal Chem; 2004 Apr; 76(8):2355-66. PubMed ID: 15080748
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
