475 related articles for article (PubMed ID: 22034872)
21. Faster SEQUEST searching for peptide identification from tandem mass spectra.
Diament BJ; Noble WS
J Proteome Res; 2011 Sep; 10(9):3871-9. PubMed ID: 21761931
[TBL] [Abstract][Full Text] [Related]
22. A novel algorithm for validating peptide identification from a shotgun proteomics search engine.
Jian L; Niu X; Xia Z; Samir P; Sumanasekera C; Mu Z; Jennings JL; Hoek KL; Allos T; Howard LM; Edwards KM; Weil PA; Link AJ
J Proteome Res; 2013 Mar; 12(3):1108-19. PubMed ID: 23402659
[TBL] [Abstract][Full Text] [Related]
23. An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics.
Wu C; Monroe ME; Xu Z; Slysz GW; Payne SH; Rodland KD; Liu T; Smith RD
J Am Soc Mass Spectrom; 2015 Dec; 26(12):2002-8. PubMed ID: 26015166
[TBL] [Abstract][Full Text] [Related]
24. HMMatch: peptide identification by spectral matching of tandem mass spectra using hidden Markov models.
Wu X; Tseng CW; Edwards N
J Comput Biol; 2007 Oct; 14(8):1025-43. PubMed ID: 17985986
[TBL] [Abstract][Full Text] [Related]
25. The plasma peptidome.
Dufresne J; Bowden P; Thavarajah T; Florentinus-Mefailoski A; Chen ZZ; Tucholska M; Norzin T; Ho MT; Phan M; Mohamed N; Ravandi A; Stanton E; Slutsky AS; Dos Santos CC; Romaschin A; Marshall JC; Addison C; Malone S; Heyland D; Scheltens P; Killestein J; Teunissen C; Diamandis EP; Siu KWM; Marshall JG
Clin Proteomics; 2018; 15():39. PubMed ID: 30519149
[TBL] [Abstract][Full Text] [Related]
26. Increased power for the analysis of label-free LC-MS/MS proteomics data by combining spectral counts and peptide peak attributes.
Dicker L; Lin X; Ivanov AR
Mol Cell Proteomics; 2010 Dec; 9(12):2704-18. PubMed ID: 20823122
[TBL] [Abstract][Full Text] [Related]
27. Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra.
Ji C; Arnold RJ; Sokoloski KJ; Hardy RW; Tang H; Radivojac P
Proteomics; 2013 Mar; 13(5):756-65. PubMed ID: 23303707
[TBL] [Abstract][Full Text] [Related]
28. Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks.
Na S; Payne SH; Bandeira N
Mol Cell Proteomics; 2016 Nov; 15(11):3501-3512. PubMed ID: 27609420
[TBL] [Abstract][Full Text] [Related]
29. Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra.
Rieder V; Schork KU; Kerschke L; Blank-Landeshammer B; Sickmann A; Rahnenführer J
J Proteome Res; 2017 Nov; 16(11):4035-4044. PubMed ID: 28959885
[TBL] [Abstract][Full Text] [Related]
30. A dynamic noise level algorithm for spectral screening of peptide MS/MS spectra.
Xu H; Freitas MA
BMC Bioinformatics; 2010 Aug; 11():436. PubMed ID: 20731867
[TBL] [Abstract][Full Text] [Related]
31. Targeted Feature Detection for Data-Dependent Shotgun Proteomics.
Weisser H; Choudhary JS
J Proteome Res; 2017 Aug; 16(8):2964-2974. PubMed ID: 28673088
[TBL] [Abstract][Full Text] [Related]
32. The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments.
Cannataro M; Cuda G; Gaspari M; Greco S; Tradigo G; Veltri P
BMC Bioinformatics; 2007 Jul; 8():255. PubMed ID: 17631686
[TBL] [Abstract][Full Text] [Related]
33. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
34. Human follicular fluid proteomic and peptidomic composition quantitative studies by SWATH-MS methodology. Applicability of high pH RP-HPLC fractionation.
Lewandowska AE; Macur K; Czaplewska P; Liss J; Łukaszuk K; Ołdziej S
J Proteomics; 2019 Jan; 191():131-142. PubMed ID: 29530678
[TBL] [Abstract][Full Text] [Related]
35. Shape-based feature matching improves protein identification via LC-MS and tandem MS.
Noy K; Towfic F; Wittenberg GM; Fasulo D
J Comput Biol; 2011 Apr; 18(4):547-57. PubMed ID: 21417940
[TBL] [Abstract][Full Text] [Related]
36. Spectral library searching for peptide identification via tandem MS.
Lam H; Aebersold R
Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
[TBL] [Abstract][Full Text] [Related]
37. SpecEncoder: deep metric learning for accurate peptide identification in proteomics.
Liu K; Tao C; Ye Y; Tang H
Bioinformatics; 2024 Jun; 40(Supplement_1):i257-i265. PubMed ID: 38940141
[TBL] [Abstract][Full Text] [Related]
38. Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
Frank AM; Monroe ME; Shah AR; Carver JJ; Bandeira N; Moore RJ; Anderson GA; Smith RD; Pevzner PA
Nat Methods; 2011 May; 8(7):587-91. PubMed ID: 21572408
[TBL] [Abstract][Full Text] [Related]
39. MZDASoft: a software architecture that enables large-scale comparison of protein expression levels over multiple samples based on liquid chromatography/tandem mass spectrometry.
Ghanat Bari M; Ramirez N; Wang Z; Zhang JM
Rapid Commun Mass Spectrom; 2015 Oct; 29(19):1841-8. PubMed ID: 26331936
[TBL] [Abstract][Full Text] [Related]
40. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
