220 related articles for article (PubMed ID: 22035328)
1. A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.
Martin JW; Yan AK; Bailey-Kellogg C; Zhou P; Donald BR
J Comput Biol; 2011 Nov; 18(11):1507-23. PubMed ID: 22035328
[TBL] [Abstract][Full Text] [Related]
2. A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.
Martin JW; Yan AK; Bailey-Kellogg C; Zhou P; Donald BR
Protein Sci; 2011 Jun; 20(6):970-85. PubMed ID: 21413097
[TBL] [Abstract][Full Text] [Related]
3. An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings.
Wang L; Donald BR
Proc IEEE Comput Syst Bioinform Conf; 2005; ():189-202. PubMed ID: 16447976
[TBL] [Abstract][Full Text] [Related]
4. An algebraic geometry approach to protein structure determination from NMR data.
Wang L; Mettu RR; Donald BR
Proc IEEE Comput Syst Bioinform Conf; 2005; ():235-46. PubMed ID: 16447981
[TBL] [Abstract][Full Text] [Related]
5. Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.
Potluri S; Yan AK; Chou JJ; Donald BR; Bailey-Kellogg C
Proteins; 2006 Oct; 65(1):203-19. PubMed ID: 16897780
[TBL] [Abstract][Full Text] [Related]
6. A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers.
Potluri S; Yan AK; Donald BR; Bailey-Kellogg C
Protein Sci; 2007 Jan; 16(1):69-81. PubMed ID: 17192589
[TBL] [Abstract][Full Text] [Related]
7. Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein.
Mueller GA; Choy WY; Yang D; Forman-Kay JD; Venters RA; Kay LE
J Mol Biol; 2000 Jun; 300(1):197-212. PubMed ID: 10864509
[TBL] [Abstract][Full Text] [Related]
8. REDCRAFT: A computational platform using residual dipolar coupling NMR data for determining structures of perdeuterated proteins in solution.
Cole CA; Daigham NS; Liu G; Montelione GT; Valafar H
PLoS Comput Biol; 2021 Feb; 17(2):e1008060. PubMed ID: 33524015
[TBL] [Abstract][Full Text] [Related]
9. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.
Zeng J; Tripathy C; Zhou P; Donald BR
Comput Syst Bioinformatics Conf; 2008; 7():169-81. PubMed ID: 19642278
[TBL] [Abstract][Full Text] [Related]
10. Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics.
Clore GM; Schwieters CD
J Am Chem Soc; 2003 Mar; 125(10):2902-12. PubMed ID: 12617657
[TBL] [Abstract][Full Text] [Related]
11. NMR structural inference of symmetric homo-oligomers.
Chandola H; Yan AK; Potluri S; Donald BR; Bailey-Kellogg C
J Comput Biol; 2011 Dec; 18(12):1757-75. PubMed ID: 21718128
[TBL] [Abstract][Full Text] [Related]
12. An Exhaustive Search Algorithm to Aid NMR-Based Structure Determination of Rotationally Symmetric Transmembrane Oligomers.
Yang J; Piai A; Shen HB; Chou JJ
Sci Rep; 2017 Dec; 7(1):17373. PubMed ID: 29234103
[TBL] [Abstract][Full Text] [Related]
13. Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.
Sgourakis NG; Lange OF; DiMaio F; André I; Fitzkee NC; Rossi P; Montelione GT; Bax A; Baker D
J Am Chem Soc; 2011 Apr; 133(16):6288-98. PubMed ID: 21466200
[TBL] [Abstract][Full Text] [Related]
14. Residual dipolar couplings in NMR structure analysis.
Lipsitz RS; Tjandra N
Annu Rev Biophys Biomol Struct; 2004; 33():387-413. PubMed ID: 15139819
[TBL] [Abstract][Full Text] [Related]
15. Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.
Clore GM; Robien MA; Gronenborn AM
J Mol Biol; 1993 May; 231(1):82-102. PubMed ID: 8496968
[TBL] [Abstract][Full Text] [Related]
16. Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure.
Wang L; Donald BR
J Biomol NMR; 2004 Jul; 29(3):223-42. PubMed ID: 15213422
[TBL] [Abstract][Full Text] [Related]
17. Increased usability, algorithmic improvements and incorporation of data mining for structure calculation of proteins with REDCRAFT software package.
Cole C; Parks C; Rachele J; Valafar H
BMC Bioinformatics; 2020 Dec; 21(Suppl 9):204. PubMed ID: 33272215
[TBL] [Abstract][Full Text] [Related]
18. Completely automated, highly error-tolerant macromolecular structure determination from multidimensional nuclear overhauser enhancement spectra and chemical shift assignments.
Kuszewski J; Schwieters CD; Garrett DS; Byrd RA; Tjandra N; Clore GM
J Am Chem Soc; 2004 May; 126(20):6258-73. PubMed ID: 15149223
[TBL] [Abstract][Full Text] [Related]
19. Use of residual dipolar couplings in structural analysis of protein-ligand complexes by solution NMR spectroscopy.
Jain NU
Methods Mol Biol; 2009; 544():231-52. PubMed ID: 19488703
[TBL] [Abstract][Full Text] [Related]
20. RDC-assisted modeling of symmetric protein homo-oligomers.
Wang X; Bansal S; Jiang M; Prestegard JH
Protein Sci; 2008 May; 17(5):899-907. PubMed ID: 18436958
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
