171 related articles for article (PubMed ID: 22044801)
1. Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints.
Snoeck J; Fellay J; Bartha I; Douek DC; Telenti A
Retrovirology; 2011 Nov; 8():87. PubMed ID: 22044801
[TBL] [Abstract][Full Text] [Related]
2. Computational evolutionary analysis of the overlapped surface (S) and polymerase (P) region in hepatitis B virus indicates the spacer domain in P is crucial for survival.
Chen P; Gan Y; Han N; Fang W; Li J; Zhao F; Hu K; Rayner S
PLoS One; 2013; 8(4):e60098. PubMed ID: 23577084
[TBL] [Abstract][Full Text] [Related]
3. Comparative analysis of variation and selection in the HCV genome.
Patiño-Galindo JÁ; González-Candelas F
Infect Genet Evol; 2017 Apr; 49():104-110. PubMed ID: 28087495
[TBL] [Abstract][Full Text] [Related]
4. Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution.
Allen TM; Altfeld M; Geer SC; Kalife ET; Moore C; O'sullivan KM; Desouza I; Feeney ME; Eldridge RL; Maier EL; Kaufmann DE; Lahaie MP; Reyor L; Tanzi G; Johnston MN; Brander C; Draenert R; Rockstroh JK; Jessen H; Rosenberg ES; Mallal SA; Walker BD
J Virol; 2005 Nov; 79(21):13239-49. PubMed ID: 16227247
[TBL] [Abstract][Full Text] [Related]
5. Synonymous site conservation in the HIV-1 genome.
Mayrose I; Stern A; Burdelova EO; Sabo Y; Laham-Karam N; Zamostiano R; Bacharach E; Pupko T
BMC Evol Biol; 2013 Aug; 13():164. PubMed ID: 23914950
[TBL] [Abstract][Full Text] [Related]
6. Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1.
Brumme ZL; Brumme CJ; Heckerman D; Korber BT; Daniels M; Carlson J; Kadie C; Bhattacharya T; Chui C; Szinger J; Mo T; Hogg RS; Montaner JS; Frahm N; Brander C; Walker BD; Harrigan PR
PLoS Pathog; 2007 Jul; 3(7):e94. PubMed ID: 17616974
[TBL] [Abstract][Full Text] [Related]
7. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.
Henn MR; Boutwell CL; Charlebois P; Lennon NJ; Power KA; Macalalad AR; Berlin AM; Malboeuf CM; Ryan EM; Gnerre S; Zody MC; Erlich RL; Green LM; Berical A; Wang Y; Casali M; Streeck H; Bloom AK; Dudek T; Tully D; Newman R; Axten KL; Gladden AD; Battis L; Kemper M; Zeng Q; Shea TP; Gujja S; Zedlack C; Gasser O; Brander C; Hess C; Günthard HF; Brumme ZL; Brumme CJ; Bazner S; Rychert J; Tinsley JP; Mayer KH; Rosenberg E; Pereyra F; Levin JZ; Young SK; Jessen H; Altfeld M; Birren BW; Walker BD; Allen TM
PLoS Pathog; 2012; 8(3):e1002529. PubMed ID: 22412369
[TBL] [Abstract][Full Text] [Related]
8. Widespread adaptive evolution in the human immunodeficiency virus type 1 genome.
Yang W; Bielawski JP; Yang Z
J Mol Evol; 2003 Aug; 57(2):212-21. PubMed ID: 14562964
[TBL] [Abstract][Full Text] [Related]
9. Frequent associations between CTL and T-Helper epitopes in HIV-1 genomes and implications for multi-epitope vaccine designs.
Paul S; Piontkivska H
BMC Microbiol; 2010 Aug; 10():212. PubMed ID: 20696039
[TBL] [Abstract][Full Text] [Related]
10. Conservation of cytotoxic T lymphocyte (CTL) epitopes as a host strategy to constrain parasite adaptation: evidence from the nef gene of human immunodeficiency virus 1 (HIV-1).
da Silva J; Hughes AL
Mol Biol Evol; 1998 Oct; 15(10):1259-68. PubMed ID: 9787432
[TBL] [Abstract][Full Text] [Related]
11. Potential immune escape mutations under inferred selection pressure in HIV-1 strains circulating in Medellín, Colombia.
Arcia D; Ochoa R; Hernández JC; Álvarez CM; Díaz FJ; Velilla PA; Acevedo-Sáenz L
Infect Genet Evol; 2019 Apr; 69():267-278. PubMed ID: 30808498
[TBL] [Abstract][Full Text] [Related]
12. Mapping the genomic diversity of HCV subtypes 1a and 1b: Implications of structural and immunological constraints for vaccine and drug development.
Cuypers L; Li G; Neumann-Haefelin C; Piampongsant S; Libin P; Van Laethem K; Vandamme AM; Theys K
Virus Evol; 2016 Jul; 2(2):vew024. PubMed ID: 27774307
[TBL] [Abstract][Full Text] [Related]
13. Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape.
Bailey JR; Zhang H; Wegweiser BW; Yang HC; Herrera L; Ahonkhai A; Williams TM; Siliciano RF; Blankson JN
J Infect Dis; 2007 Jul; 196(1):50-5. PubMed ID: 17538883
[TBL] [Abstract][Full Text] [Related]
14. Conflicting selection pressures on T-cell epitopes in HIV-1 subtype B.
Irausquin SJ; Hughes AL
Infect Genet Evol; 2011 Mar; 11(2):483-8. PubMed ID: 21232634
[TBL] [Abstract][Full Text] [Related]
15. Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection.
Allen TM; Altfeld M; Yu XG; O'Sullivan KM; Lichterfeld M; Le Gall S; John M; Mothe BR; Lee PK; Kalife ET; Cohen DE; Freedberg KA; Strick DA; Johnston MN; Sette A; Rosenberg ES; Mallal SA; Goulder PJ; Brander C; Walker BD
J Virol; 2004 Jul; 78(13):7069-78. PubMed ID: 15194783
[TBL] [Abstract][Full Text] [Related]
16. Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes.
Choisy M; Woelk CH; Guégan JF; Robertson DL
J Virol; 2004 Feb; 78(4):1962-70. PubMed ID: 14747561
[TBL] [Abstract][Full Text] [Related]
17. Frequent toggling between alternative amino acids is driven by selection in HIV-1.
Delport W; Scheffler K; Seoighe C
PLoS Pathog; 2008 Dec; 4(12):e1000242. PubMed ID: 19096508
[TBL] [Abstract][Full Text] [Related]
18. Identification and Characterization of Positively Selected Mutations in Nef of Four HIV-1 Major Subtypes from Los Alamos National Laboratory.
Shadabi E; Liang B; Plummer F; Luo M
Curr HIV Res; 2018; 16(2):130-142. PubMed ID: 29600767
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide diversity and selective pressure in the human rhinovirus.
Kistler AL; Webster DR; Rouskin S; Magrini V; Credle JJ; Schnurr DP; Boushey HA; Mardis ER; Li H; DeRisi JL
Virol J; 2007 May; 4():40. PubMed ID: 17477878
[TBL] [Abstract][Full Text] [Related]
20. HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC.
Wood N; Bhattacharya T; Keele BF; Giorgi E; Liu M; Gaschen B; Daniels M; Ferrari G; Haynes BF; McMichael A; Shaw GM; Hahn BH; Korber B; Seoighe C
PLoS Pathog; 2009 May; 5(5):e1000414. PubMed ID: 19424423
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
