269 related articles for article (PubMed ID: 22069443)
1. Putting into practice domain-linear motif interaction predictions for exploration of protein networks.
Luck K; Fournane S; Kieffer B; Masson M; Nominé Y; Travé G
PLoS One; 2011; 6(11):e25376. PubMed ID: 22069443
[TBL] [Abstract][Full Text] [Related]
2. Predicting PDZ domain mediated protein interactions from structure.
Hui S; Xing X; Bader GD
BMC Bioinformatics; 2013 Jan; 14():27. PubMed ID: 23336252
[TBL] [Abstract][Full Text] [Related]
3. Evolutionarily conserved bias of amino-acid usage refines the definition of PDZ-binding motif.
Chimura T; Launey T; Ito M
BMC Genomics; 2011 Jun; 12():300. PubMed ID: 21649932
[TBL] [Abstract][Full Text] [Related]
4. Proteome scanning to predict PDZ domain interactions using support vector machines.
Hui S; Bader GD
BMC Bioinformatics; 2010 Oct; 11():507. PubMed ID: 20939902
[TBL] [Abstract][Full Text] [Related]
5. A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.
Shao X; Tan CS; Voss C; Li SS; Deng N; Bader GD
Bioinformatics; 2011 Feb; 27(3):383-90. PubMed ID: 21127034
[TBL] [Abstract][Full Text] [Related]
6. Peptide binding properties of the three PDZ domains of Bazooka (Drosophila Par-3).
Yu CG; Tonikian R; Felsensteiner C; Jhingree JR; Desveaux D; Sidhu SS; Harris TJ
PLoS One; 2014; 9(1):e86412. PubMed ID: 24466078
[TBL] [Abstract][Full Text] [Related]
7. Interaction prediction and classification of PDZ domains.
Kalyoncu S; Keskin O; Gursoy A
BMC Bioinformatics; 2010 Jun; 11():357. PubMed ID: 20591147
[TBL] [Abstract][Full Text] [Related]
8. Prevalence, specificity and determinants of lipid-interacting PDZ domains from an in-cell screen and in vitro binding experiments.
Ivarsson Y; Wawrzyniak AM; Kashyap R; Polanowska J; Betzi S; Lembo F; Vermeiren E; Chiheb D; Lenfant N; Morelli X; Borg JP; Reboul J; Zimmermann P
PLoS One; 2013; 8(2):e54581. PubMed ID: 23390500
[TBL] [Abstract][Full Text] [Related]
9. Insights into the C-terminal Peptide Binding Specificity of the PDZ Domain of Neuronal Nitric-oxide Synthase: CHARACTERIZATION OF THE INTERACTION WITH THE TIGHT JUNCTION PROTEIN CLAUDIN-3.
Merino-Gracia J; Costas-Insua C; Canales MÁ; Rodríguez-Crespo I
J Biol Chem; 2016 May; 291(22):11581-95. PubMed ID: 27030110
[TBL] [Abstract][Full Text] [Related]
10. A sequence-based computational approach to predicting PDZ domain-peptide interactions.
Nakariyakul S; Liu ZP; Chen L
Biochim Biophys Acta; 2014 Jan; 1844(1 Pt B):165-70. PubMed ID: 23608946
[TBL] [Abstract][Full Text] [Related]
11. Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides.
Wiedemann U; Boisguerin P; Leben R; Leitner D; Krause G; Moelling K; Volkmer-Engert R; Oschkinat H
J Mol Biol; 2004 Oct; 343(3):703-18. PubMed ID: 15465056
[TBL] [Abstract][Full Text] [Related]
12. Structure-based identification of CaMKIIα-interacting MUPP1 PDZ domains and rational design of peptide ligands to target such interaction in human fertilization.
Zhang YL; Han ZF; Sun YP
Amino Acids; 2016 Jun; 48(6):1509-21. PubMed ID: 26984442
[TBL] [Abstract][Full Text] [Related]
13. Phage display can select over-hydrophobic sequences that may impair prediction of natural domain-peptide interactions.
Luck K; Travé G
Bioinformatics; 2011 Apr; 27(7):899-902. PubMed ID: 21300698
[TBL] [Abstract][Full Text] [Related]
14. Single-amino acid substitutions alter the specificity and affinity of PDZ domains for their ligands.
Gee SH; Quenneville S; Lombardo CR; Chabot J
Biochemistry; 2000 Nov; 39(47):14638-46. PubMed ID: 11087420
[TBL] [Abstract][Full Text] [Related]
15. An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity.
van den Berk LC; Landi E; Walma T; Vuister GW; Dente L; Hendriks WJ
Biochemistry; 2007 Nov; 46(47):13629-37. PubMed ID: 17979300
[TBL] [Abstract][Full Text] [Related]
16. The emerging contribution of sequence context to the specificity of protein interactions mediated by PDZ domains.
Luck K; Charbonnier S; Travé G
FEBS Lett; 2012 Aug; 586(17):2648-61. PubMed ID: 22709956
[TBL] [Abstract][Full Text] [Related]
17. Cluster based prediction of PDZ-peptide interactions.
Kundu K; Backofen R
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S5. PubMed ID: 24564547
[TBL] [Abstract][Full Text] [Related]
18. Simultaneous prediction of binding free energy and specificity for PDZ domain-peptide interactions.
Crivelli JJ; Lemmon G; Kaufmann KW; Meiler J
J Comput Aided Mol Des; 2013 Dec; 27(12):1051-65. PubMed ID: 24305904
[TBL] [Abstract][Full Text] [Related]
19. Structure function relations in PDZ-domain-containing proteins: Implications for protein networks in cellular signalling.
Manjunath GP; Ramanujam PL; Galande S
J Biosci; 2018 Mar; 43(1):155-171. PubMed ID: 29485124
[TBL] [Abstract][Full Text] [Related]
20. MotifAnalyzer-PDZ: A computational program to investigate the evolution of PDZ-binding target specificity.
Valgardson J; Cosbey R; Houser P; Rupp M; Van Bronkhorst R; Lee M; Jagodzinski F; Amacher JF
Protein Sci; 2019 Dec; 28(12):2127-2143. PubMed ID: 31599029
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]