These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
177 related articles for article (PubMed ID: 22105881)
1. Longer simulations sample larger subspaces of conformations while maintaining robust mechanisms of motion. Liu L; Gronenborn AM; Bahar I Proteins; 2012 Feb; 80(2):616-25. PubMed ID: 22105881 [TBL] [Abstract][Full Text] [Related]
2. Effect of the Crystal Environment on Side-Chain Conformational Dynamics in Cyanovirin-N Investigated through Crystal and Solution Molecular Dynamics Simulations. Ahlstrom LS; Vorontsov II; Shi J; Miyashita O PLoS One; 2017; 12(1):e0170337. PubMed ID: 28107510 [TBL] [Abstract][Full Text] [Related]
3. Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin. Caves LS; Evanseck JD; Karplus M Protein Sci; 1998 Mar; 7(3):649-66. PubMed ID: 9541397 [TBL] [Abstract][Full Text] [Related]
4. Validating Molecular Dynamics Simulations against Experimental Observables in Light of Underlying Conformational Ensembles. Childers MC; Daggett V J Phys Chem B; 2018 Jul; 122(26):6673-6689. PubMed ID: 29864281 [TBL] [Abstract][Full Text] [Related]
5. Conformational dynamics of cytochrome c: correlation to hydrogen exchange. García AE; Hummer G Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365 [TBL] [Abstract][Full Text] [Related]
6. Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations. Ostermeir K; Zacharias M Proteins; 2014 Dec; 82(12):3410-9. PubMed ID: 25243707 [TBL] [Abstract][Full Text] [Related]
7. Slow dynamics of a protein backbone in molecular dynamics simulation revealed by time-structure based independent component analysis. Naritomi Y; Fuchigami S J Chem Phys; 2013 Dec; 139(21):215102. PubMed ID: 24320404 [TBL] [Abstract][Full Text] [Related]
8. Application of time series analysis on molecular dynamics simulations of proteins: a study of different conformational spaces by principal component analysis. Alakent B; Doruker P; Camurdan MC J Chem Phys; 2004 Sep; 121(10):4759-69. PubMed ID: 15332910 [TBL] [Abstract][Full Text] [Related]
9. Origin of conformational dynamics in a globular protein. Damry AM; Mayer MM; Broom A; Goto NK; Chica RA Commun Biol; 2019; 2():433. PubMed ID: 31799435 [TBL] [Abstract][Full Text] [Related]
11. [Protein conformational dynamics of crambin in crystal, solution and in the trajectories of molecular dynamics simulations]. Abaturov LV; Nosova NG Biofizika; 2013; 58(4):599-617. PubMed ID: 24455881 [TBL] [Abstract][Full Text] [Related]
12. Solution and crystal molecular dynamics simulation study of m4-cyanovirin-N mutants complexed with di-mannose. Vorontsov II; Miyashita O Biophys J; 2009 Nov; 97(9):2532-40. PubMed ID: 19883596 [TBL] [Abstract][Full Text] [Related]
13. General order parameter based correlation analysis of protein backbone motions between experimental NMR relaxation measurements and molecular dynamics simulations. Liu Q; Shi C; Yu L; Zhang L; Xiong Y; Tian C Biochem Biophys Res Commun; 2015 Feb; 457(3):467-72. PubMed ID: 25600810 [TBL] [Abstract][Full Text] [Related]
14. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery. Kalescky R; Zhou H; Liu J; Tao P PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535 [TBL] [Abstract][Full Text] [Related]
15. Molecular dynamics and NMR spin relaxation in proteins. Case DA Acc Chem Res; 2002 Jun; 35(6):325-31. PubMed ID: 12069616 [TBL] [Abstract][Full Text] [Related]
16. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials. Hassan SA; Mehler EL; Zhang D; Weinstein H Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268 [TBL] [Abstract][Full Text] [Related]
17. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein. Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325 [TBL] [Abstract][Full Text] [Related]
20. Nuclear magnetic resonance provides a quantitative description of protein conformational flexibility on physiologically important time scales. Salmon L; Bouvignies G; Markwick P; Blackledge M Biochemistry; 2011 Apr; 50(14):2735-47. PubMed ID: 21388216 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]