BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

99 related articles for article (PubMed ID: 22130876)

  • 1. Using the bioconductor GeneAnswers package to interpret gene lists.
    Feng G; Shaw P; Rosen ST; Lin SM; Kibbe WA
    Methods Mol Biol; 2012; 802():101-12. PubMed ID: 22130876
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inference of regulatory networks from microarray data with R and the bioconductor package qpgraph.
    Castelo R; Roverato A
    Methods Mol Biol; 2012; 802():215-33. PubMed ID: 22130883
    [TBL] [Abstract][Full Text] [Related]  

  • 3. OrderedList--a bioconductor package for detecting similarity in ordered gene lists.
    Lottaz C; Yang X; Scheid S; Spang R
    Bioinformatics; 2006 Sep; 22(18):2315-6. PubMed ID: 16844712
    [TBL] [Abstract][Full Text] [Related]  

  • 4. goCluster integrates statistical analysis and functional interpretation of microarray expression data.
    Wrobel G; Chalmel F; Primig M
    Bioinformatics; 2005 Sep; 21(17):3575-7. PubMed ID: 16020468
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A gene network simulator to assess reverse engineering algorithms.
    Di Camillo B; Toffolo G; Cobelli C
    Ann N Y Acad Sci; 2009 Mar; 1158():125-42. PubMed ID: 19348638
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
    Durinck S; Moreau Y; Kasprzyk A; Davis S; De Moor B; Brazma A; Huber W
    Bioinformatics; 2005 Aug; 21(16):3439-40. PubMed ID: 16082012
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest.
    Diaz-Uriarte R
    BMC Bioinformatics; 2007 Sep; 8():328. PubMed ID: 17767709
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Microarray data analysis.
    Mohapatra SK; Krishnan A
    Methods Mol Biol; 2011; 678():27-43. PubMed ID: 20931370
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The reconstruction of transcriptional networks reveals critical genes with implications for clinical outcome of multiple myeloma.
    Agnelli L; Forcato M; Ferrari F; Tuana G; Todoerti K; Walker BA; Morgan GJ; Lombardi L; Bicciato S; Neri A
    Clin Cancer Res; 2011 Dec; 17(23):7402-12. PubMed ID: 21890453
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Regulatory motif finding by logic regression.
    Keles S; van der Laan MJ; Vulpe C
    Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stability and aggregation of ranked gene lists.
    Boulesteix AL; Slawski M
    Brief Bioinform; 2009 Sep; 10(5):556-68. PubMed ID: 19679825
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Gene expression profiling in multiple myeloma--reporting of entities, risk, and targets in clinical routine.
    Meissner T; Seckinger A; Rème T; Hielscher T; Möhler T; Neben K; Goldschmidt H; Klein B; Hose D
    Clin Cancer Res; 2011 Dec; 17(23):7240-7. PubMed ID: 21986844
    [TBL] [Abstract][Full Text] [Related]  

  • 13. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PathGen: a transitive gene pathway generator.
    Clement K; Gustafson N; Berbert A; Carroll H; Merris C; Olsen A; Clement M; Snell Q; Allen J; Roper RJ
    Bioinformatics; 2010 Feb; 26(3):423-5. PubMed ID: 19965882
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pre-processing of microarray data and analysis of differential expression.
    Durinck S
    Methods Mol Biol; 2008; 452():89-110. PubMed ID: 18563370
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bioinformatics analysis of microarray data.
    Zhang Y; Szustakowski J; Schinke M
    Methods Mol Biol; 2009; 573():259-84. PubMed ID: 19763933
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Extending pathways based on gene lists using InterPro domain signatures.
    Hahne F; Mehrle A; Arlt D; Poustka A; Wiemann S; Beissbarth T
    BMC Bioinformatics; 2008 Jan; 9():3. PubMed ID: 18177498
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
    Taylor RC; Singhal M; Weller J; Khoshnevis S; Shi L; McDermott J
    Ann N Y Acad Sci; 2009 Mar; 1158():143-58. PubMed ID: 19348639
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
    Qiu P; Gentles AJ; Plevritis SK
    Comput Methods Programs Biomed; 2009 May; 94(2):177-80. PubMed ID: 19167129
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.
    Shimamura T; Imoto S; Yamaguchi R; Nagasaki M; Miyano S
    Bioinformatics; 2010 Apr; 26(8):1064-72. PubMed ID: 20197286
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.