BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

358 related articles for article (PubMed ID: 22130886)

  • 1. How to analyze gene expression using RNA-sequencing data.
    Ramsköld D; Kavak E; Sandberg R
    Methods Mol Biol; 2012; 802():259-74. PubMed ID: 22130886
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Overview of available methods for diverse RNA-Seq data analyses.
    Chen G; Wang C; Shi T
    Sci China Life Sci; 2011 Dec; 54(12):1121-8. PubMed ID: 22227904
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas.
    Gavery MR; Roberts SB
    Comp Biochem Physiol Part D Genomics Proteomics; 2012 Jun; 7(2):94-9. PubMed ID: 22244882
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Quantitative transcriptome analysis using RNA-seq.
    Külahoglu C; Bräutigam A
    Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Small RNA transcriptome investigation based on next-generation sequencing technology.
    Zhou L; Li X; Liu Q; Zhao F; Wu J
    J Genet Genomics; 2011 Nov; 38(11):505-13. PubMed ID: 22133681
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA-Seq: revelation of the messengers.
    Van Verk MC; Hickman R; Pieterse CM; Van Wees SC
    Trends Plant Sci; 2013 Apr; 18(4):175-9. PubMed ID: 23481128
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
    Strickler SR; Bombarely A; Mueller LA
    Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.
    van Delft J; Gaj S; Lienhard M; Albrecht MW; Kirpiy A; Brauers K; Claessen S; Lizarraga D; Lehrach H; Herwig R; Kleinjans J
    Toxicol Sci; 2012 Dec; 130(2):427-39. PubMed ID: 22889811
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A comparison of analog and Next-Generation transcriptomic tools for mammalian studies.
    Roy NC; Altermann E; Park ZA; McNabb WC
    Brief Funct Genomics; 2011 May; 10(3):135-50. PubMed ID: 21389008
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.
    Vijay N; Poelstra JW; Künstner A; Wolf JB
    Mol Ecol; 2013 Feb; 22(3):620-34. PubMed ID: 22998089
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys.
    Su Z; Li Z; Chen T; Li QZ; Fang H; Ding D; Ge W; Ning B; Hong H; Perkins RG; Tong W; Shi L
    Chem Res Toxicol; 2011 Sep; 24(9):1486-93. PubMed ID: 21834575
    [TBL] [Abstract][Full Text] [Related]  

  • 13. miRNA data analysis: next-gen sequencing.
    Gunaratne PH; Coarfa C; Soibam B; Tandon A
    Methods Mol Biol; 2012; 822():273-88. PubMed ID: 22144206
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
    Pan Q; Shai O; Lee LJ; Frey BJ; Blencowe BJ
    Nat Genet; 2008 Dec; 40(12):1413-5. PubMed ID: 18978789
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.
    Lu B; Zeng Z; Shi T
    Sci China Life Sci; 2013 Feb; 56(2):143-55. PubMed ID: 23393030
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing.
    Wilhelm BT; Landry JR
    Methods; 2009 Jul; 48(3):249-57. PubMed ID: 19336255
    [TBL] [Abstract][Full Text] [Related]  

  • 17. deGPS is a powerful tool for detecting differential expression in RNA-sequencing studies.
    Chu C; Fang Z; Hua X; Yang Y; Chen E; Cowley AW; Liang M; Liu P; Lu Y
    BMC Genomics; 2015 Jun; 16(1):455. PubMed ID: 26070955
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Transcriptomics in the RNA-seq era.
    McGettigan PA
    Curr Opin Chem Biol; 2013 Feb; 17(1):4-11. PubMed ID: 23290152
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational analysis of RNA-seq.
    Givan SA; Bottoms CA; Spollen WG
    Methods Mol Biol; 2012; 883():201-19. PubMed ID: 22589136
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Transcriptome analysis using RNA-Seq.
    Hoeijmakers WA; Bártfai R; Stunnenberg HG
    Methods Mol Biol; 2013; 923():221-39. PubMed ID: 22990781
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.