These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 22130979)

  • 1. Prediction of protein tertiary structures using MUFOLD.
    Zhang J; He Z; Wang Q; Barz B; Kosztin I; Shang Y; Xu D
    Methods Mol Biol; 2012; 815():3-13. PubMed ID: 22130979
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MUFOLD: A new solution for protein 3D structure prediction.
    Zhang J; Wang Q; Barz B; He Z; Kosztin I; Shang Y; Xu D
    Proteins; 2010 Apr; 78(5):1137-52. PubMed ID: 19927325
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A multilayer evaluation approach for protein structure prediction and model quality assessment.
    Zhang J; Wang Q; Vantasin K; Zhang J; He Z; Kosztin I; Shang Y; Xu D
    Proteins; 2011; 79 Suppl 10(Suppl 10):172-84. PubMed ID: 21997706
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction.
    Fang C; Shang Y; Xu D
    Proteins; 2018 May; 86(5):592-598. PubMed ID: 29492997
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Selective refinement and selection of near-native models in protein structure prediction.
    Zhang J; Barz B; Zhang J; Xu D; Kosztin I
    Proteins; 2015 Oct; 83(10):1823-35. PubMed ID: 26214389
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
    Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
    BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11.
    Cao R; Bhattacharya D; Adhikari B; Li J; Cheng J
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):247-59. PubMed ID: 26369671
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mimicking the folding pathway to improve homology-free protein structure prediction.
    DeBartolo J; Colubri A; Jha AK; Fitzgerald JE; Freed KF; Sosnick TR
    Proc Natl Acad Sci U S A; 2009 Mar; 106(10):3734-9. PubMed ID: 19237560
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.
    Bystroff C; Shao Y
    Bioinformatics; 2002; 18 Suppl 1():S54-61. PubMed ID: 12169531
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 13. eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.
    Brylinski M; Lingam D
    PLoS One; 2012; 7(11):e50200. PubMed ID: 23185577
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein structure prediction based on sequence similarity.
    Jaroszewski L
    Methods Mol Biol; 2009; 569():129-56. PubMed ID: 19623489
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DOMAC: an accurate, hybrid protein domain prediction server.
    Cheng J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MUFold-SSW: a new web server for predicting protein secondary structures, torsion angles and turns.
    Fang C; Li Z; Xu D; Shang Y
    Bioinformatics; 2020 Feb; 36(4):1293-1295. PubMed ID: 31532508
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Principles, challenges and advances in ab initio protein structure prediction.
    Jothi A
    Protein Pept Lett; 2012 Nov; 19(11):1194-204. PubMed ID: 22587787
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
    Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A sampling-based method for ranking protein structural models by integrating multiple scores and features.
    Shi X; Zhang J; He Z; Shang Y; Xu D
    Curr Protein Pept Sci; 2011 Sep; 12(6):540-8. PubMed ID: 21787308
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PSPP: a protein structure prediction pipeline for computing clusters.
    Lee MS; Bondugula R; Desai V; Zavaljevski N; Yeh IC; Wallqvist A; Reifman J
    PLoS One; 2009 Jul; 4(7):e6254. PubMed ID: 19606223
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.