These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

245 related articles for article (PubMed ID: 22132132)

  • 41. MRL and SuperFine+MRL: new supertree methods.
    Nguyen N; Mirarab S; Warnow T
    Algorithms Mol Biol; 2012 Jan; 7(1):3. PubMed ID: 22280525
    [TBL] [Abstract][Full Text] [Related]  

  • 42. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.
    Matsen FA; Kodner RB; Armbrust EV
    BMC Bioinformatics; 2010 Oct; 11():538. PubMed ID: 21034504
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracy.
    Liu K; Nelesen S; Raghavan S; Linder CR; Warnow T
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):7-21. PubMed ID: 19179695
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene.
    Zhang Y; Alekseyenko AV
    PLoS One; 2017; 12(11):e0187940. PubMed ID: 29136663
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes.
    Ruane S; Raxworthy CJ; Lemmon AR; Lemmon EM; Burbrink FT
    BMC Evol Biol; 2015 Oct; 15():221. PubMed ID: 26459325
    [TBL] [Abstract][Full Text] [Related]  

  • 46. FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization.
    Vachaspati P; Warnow T
    Bioinformatics; 2017 Mar; 33(5):631-639. PubMed ID: 27663499
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Using RAxML to Infer Phylogenies.
    Stamatakis A
    Curr Protoc Bioinformatics; 2015 Sep; 51():6.14.1-6.14.14. PubMed ID: 26334924
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation.
    Sullivan J; Abdo Z; Joyce P; Swofford DL
    Mol Biol Evol; 2005 Jun; 22(6):1386-92. PubMed ID: 15758203
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Evolutionary tree reconstruction using structural expectation maximization and homotopy.
    Li J; Guo M
    Genet Mol Res; 2007 Sep; 6(3):522-33. PubMed ID: 17985305
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Diverse phylogenomic datasets uncover a concordant scenario of laurasiatherian interordinal relationships.
    Lv X; Hu J; Hu Y; Li Y; Xu D; Ryder OA; Irwin DM; Yu L
    Mol Phylogenet Evol; 2021 Apr; 157():107065. PubMed ID: 33387649
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Multiple sequence alignment accuracy and phylogenetic inference.
    Ogden TH; Rosenberg MS
    Syst Biol; 2006 Apr; 55(2):314-28. PubMed ID: 16611602
    [TBL] [Abstract][Full Text] [Related]  

  • 52. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 53. RAxML Grove: an empirical phylogenetic tree database.
    Höhler D; Pfeiffer W; Ioannidis V; Stockinger H; Stamatakis A
    Bioinformatics; 2022 Mar; 38(6):1741-1742. PubMed ID: 34962976
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL; Hollich V
    BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Multiple sequence alignment: a major challenge to large-scale phylogenetics.
    Liu K; Linder CR; Warnow T
    PLoS Curr; 2010 Nov; 2():RRN1198. PubMed ID: 21113338
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Exploring the relationship between sequence similarity and accurate phylogenetic trees.
    Cantarel BL; Morrison HG; Pearson W
    Mol Biol Evol; 2006 Nov; 23(11):2090-100. PubMed ID: 16891377
    [TBL] [Abstract][Full Text] [Related]  

  • 57. PUmPER: phylogenies updated perpetually.
    Izquierdo-Carrasco F; Cazes J; Smith SA; Stamatakis A
    Bioinformatics; 2014 May; 30(10):1476-7. PubMed ID: 24478338
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP*.
    Ogden TH; Rosenberg MS
    Syst Biol; 2007 Apr; 56(2):182-93. PubMed ID: 17454974
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Large-scale multiple sequence alignment and tree estimation using SATé.
    Liu K; Warnow T
    Methods Mol Biol; 2014; 1079():219-44. PubMed ID: 24170406
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.