These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

370 related articles for article (PubMed ID: 22144166)

  • 1. Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.
    Batt G; Besson B; Ciron PE; de Jong H; Dumas E; Geiselmann J; Monte R; Monteiro PT; Page M; Rechenmann F; Ropers D
    Methods Mol Biol; 2012; 804():439-62. PubMed ID: 22144166
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli.
    Batt G; Ropers D; de Jong H; Geiselmann J; Mateescu R; Page M; Schneider D
    Bioinformatics; 2005 Jun; 21 Suppl 1():i19-28. PubMed ID: 15961457
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Qualitative simulation of genetic regulatory networks using piecewise-linear models.
    De Jong H; Gouzé JL; Hernandez C; Page M; Sari T; Geiselmann J
    Bull Math Biol; 2004 Mar; 66(2):301-40. PubMed ID: 14871568
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Logical modelling of gene regulatory networks with GINsim.
    Chaouiya C; Naldi A; Thieffry D
    Methods Mol Biol; 2012; 804():463-79. PubMed ID: 22144167
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparing Boolean and piecewise affine differential models for genetic networks.
    Chaves M; Tournier L; Gouzé JL
    Acta Biotheor; 2010 Sep; 58(2-3):217-32. PubMed ID: 20665073
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Search for steady states of piecewise-linear differential equation models of genetic regulatory networks.
    de Jong H; Page M
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(2):208-22. PubMed ID: 18451430
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Gene expression complex networks: synthesis, identification, and analysis.
    Lopes FM; Cesar RM; Costa Lda F
    J Comput Biol; 2011 Oct; 18(10):1353-67. PubMed ID: 21548810
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.
    Longabaugh WJ
    Methods Mol Biol; 2012; 786():359-94. PubMed ID: 21938637
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks.
    Jamshidi S; Siebert H; Bockmayr A
    Biosystems; 2013 May; 112(2):171-9. PubMed ID: 23499821
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Petri nets in Snoopy: a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks.
    Marwan W; Rohr C; Heiner M
    Methods Mol Biol; 2012; 804():409-37. PubMed ID: 22144165
    [TBL] [Abstract][Full Text] [Related]  

  • 11. On the transient and steady-state estimates of interval genetic regulatory networks.
    Li P; Lam J; Shu Z
    IEEE Trans Syst Man Cybern B Cybern; 2010 Apr; 40(2):336-49. PubMed ID: 19858029
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MAVisto: a tool for biological network motif analysis.
    Schwöbbermeyer H; Wünschiers R
    Methods Mol Biol; 2012; 804():263-80. PubMed ID: 22144158
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling of gene regulatory network dynamics using threshold logic.
    Gowda T; Vrudhula S; Kim S
    Ann N Y Acad Sci; 2009 Mar; 1158():71-81. PubMed ID: 19348633
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reconstruction of transcriptional network from microarray data using combined mutual information and network-assisted regression.
    Wang XD; Qi YX; Jiang ZL
    IET Syst Biol; 2011 Mar; 5(2):95-102. PubMed ID: 21405197
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ingeneue: a software tool to simulate and explore genetic regulatory networks.
    Kim KJ
    Methods Mol Biol; 2009; 500():169-200. PubMed ID: 19399429
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A hierarchical approach to model parameter optimization for developmental systems.
    Hohm T; Zitzler E
    Biosystems; 2010; 102(2-3):157-67. PubMed ID: 20851739
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Implicit methods for qualitative modeling of gene regulatory networks.
    Garg A; Mohanram K; De Micheli G; Xenarios I
    Methods Mol Biol; 2012; 786():397-443. PubMed ID: 21938638
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Logical modelling of regulatory networks with GINsim 2.3.
    Naldi A; Berenguier D; Fauré A; Lopez F; Thieffry D; Chaouiya C
    Biosystems; 2009 Aug; 97(2):134-9. PubMed ID: 19426782
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm.
    Wang M; Augusto Benedito V; Xuechun Zhao P; Udvardi M
    Mol Biosyst; 2010 Jun; 6(6):988-98. PubMed ID: 20485743
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using the NeAT toolbox to compare networks to networks, clusters to clusters, and network to clusters.
    Brohée S
    Methods Mol Biol; 2012; 804():327-42. PubMed ID: 22144162
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.