These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 22151831)

  • 1. Origin and evolution of gene families in Bacteria and Archaea.
    Collins RE; Merz H; Higgs PG
    BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S14. PubMed ID: 22151831
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.
    Wolf YI; Makarova KS; Yutin N; Koonin EV
    Biol Direct; 2012 Dec; 7():46. PubMed ID: 23241446
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Lineage-specific gene expansions in bacterial and archaeal genomes.
    Jordan IK; Makarova KS; Spouge JL; Wolf YI; Koonin EV
    Genome Res; 2001 Apr; 11(4):555-65. PubMed ID: 11282971
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.
    Puigbò P; Lobkovsky AE; Kristensen DM; Wolf YI; Koonin EV
    BMC Biol; 2014 Aug; 12():66. PubMed ID: 25141959
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genomes in flux: the evolution of archaeal and proteobacterial gene content.
    Snel B; Bork P; Huynen MA
    Genome Res; 2002 Jan; 12(1):17-25. PubMed ID: 11779827
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
    Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
    Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Long range segmentation of prokaryotic genomes by gene age and functionality.
    Wolf YI; Schurov IV; Makarova KS; Katsnelson MI; Koonin EV
    Nucleic Acids Res; 2024 Oct; 52(18):11045-11059. PubMed ID: 39193895
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes.
    Sanchez I; Hernandez-Guerrero R; Mendez-Monroy PE; Martinez-Nuñez MA; Ibarra JA; Pérez-Rueda E
    Genes (Basel); 2020 Jan; 11(1):. PubMed ID: 31947717
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.
    Siegel N; Hoegg S; Salzburger W; Braasch I; Meyer A
    BMC Genomics; 2007 Sep; 8():312. PubMed ID: 17822543
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.
    Koonin EV; Mushegian AR; Galperin MY; Walker DR
    Mol Microbiol; 1997 Aug; 25(4):619-37. PubMed ID: 9379893
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model.
    Csurös M; Miklós I
    Mol Biol Evol; 2009 Sep; 26(9):2087-95. PubMed ID: 19570746
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling gene family evolution and reconciling phylogenetic discord.
    Szöllosi GJ; Daubin V
    Methods Mol Biol; 2012; 856():29-51. PubMed ID: 22399454
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Testing the infinitely many genes model for the evolution of the bacterial core genome and pangenome.
    Collins RE; Higgs PG
    Mol Biol Evol; 2012 Nov; 29(11):3413-25. PubMed ID: 22752048
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational modelling of chromosomally clustering protein domains in bacteria.
    Cotroneo CE; Gormley IC; Shields DC; Salter-Townshend M
    BMC Bioinformatics; 2021 Dec; 22(1):593. PubMed ID: 34906073
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reconstruction of the evolution of microbial defense systems.
    Puigbò P; Makarova KS; Kristensen DM; Wolf YI; Koonin EV
    BMC Evol Biol; 2017 Apr; 17(1):94. PubMed ID: 28376755
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparative genomics of gene-family size in closely related bacteria.
    Pushker R; Mira A; Rodríguez-Valera F
    Genome Biol; 2004; 5(4):R27. PubMed ID: 15059260
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.
    Koonin EV; Wolf YI
    Nucleic Acids Res; 2008 Dec; 36(21):6688-719. PubMed ID: 18948295
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters.
    Despalins A; Marsit S; Oberto J
    Bioinformatics; 2011 Oct; 27(20):2905-6. PubMed ID: 21840875
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
    Wolf YI; Rogozin IB; Kondrashov AS; Koonin EV
    Genome Res; 2001 Mar; 11(3):356-72. PubMed ID: 11230160
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.