BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

425 related articles for article (PubMed ID: 22154470)

  • 1. Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.
    Scholz MB; Lo CC; Chain PS
    Curr Opin Biotechnol; 2012 Feb; 23(1):9-15. PubMed ID: 22154470
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.
    Gu W; Miller S; Chiu CY
    Annu Rev Pathol; 2019 Jan; 14():319-338. PubMed ID: 30355154
    [TBL] [Abstract][Full Text] [Related]  

  • 3. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets.
    Scheuch M; Höper D; Beer M
    BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Next-generation sequencing: big data meets high performance computing.
    Schmidt B; Hildebrandt A
    Drug Discov Today; 2017 Apr; 22(4):712-717. PubMed ID: 28163155
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.
    Meyer F; Bagchi S; Chaterji S; Gerlach W; Grama A; Harrison T; Paczian T; Trimble WL; Wilke A
    Brief Bioinform; 2019 Jul; 20(4):1151-1159. PubMed ID: 29028869
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Lambda: the local aligner for massive biological data.
    Hauswedell H; Singer J; Reinert K
    Bioinformatics; 2014 Sep; 30(17):i349-55. PubMed ID: 25161219
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.
    Zhou W; Li R; Yuan S; Liu C; Yao S; Luo J; Niu B
    Bioinformatics; 2017 Apr; 33(7):1090-1092. PubMed ID: 28065898
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Continuous Embeddings of DNA Sequencing Reads and Application to Metagenomics.
    Menegaux R; Vert JP
    J Comput Biol; 2019 Jun; 26(6):509-518. PubMed ID: 30785347
    [No Abstract]   [Full Text] [Related]  

  • 11. From genomics to metagenomics.
    Desai N; Antonopoulos D; Gilbert JA; Glass EM; Meyer F
    Curr Opin Biotechnol; 2012 Feb; 23(1):72-6. PubMed ID: 22227326
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Single cell genome sequencing.
    Yilmaz S; Singh AK
    Curr Opin Biotechnol; 2012 Jun; 23(3):437-43. PubMed ID: 22154471
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.
    Schlaberg R; Chiu CY; Miller S; Procop GW; Weinstock G; ;
    Arch Pathol Lab Med; 2017 Jun; 141(6):776-786. PubMed ID: 28169558
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ensemble analysis of adaptive compressed genome sequencing strategies.
    Taghavi Z
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S13. PubMed ID: 25252999
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Harnessing the Power of Next-Generation Sequencing.
    Muller M
    Genet Test Mol Biomarkers; 2017 Jan; 21(1):1-2. PubMed ID: 28085497
    [No Abstract]   [Full Text] [Related]  

  • 16. Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes.
    Jonsson V; Österlund T; Nerman O; Kristiansson E
    J Comput Biol; 2017 Apr; 24(4):311-326. PubMed ID: 27892712
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bioinformatics for NGS-based metagenomics and the application to biogas research.
    Jünemann S; Kleinbölting N; Jaenicke S; Henke C; Hassa J; Nelkner J; Stolze Y; Albaum SP; Schlüter A; Goesmann A; Sczyrba A; Stoye J
    J Biotechnol; 2017 Nov; 261():10-23. PubMed ID: 28823476
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AFS: identification and quantification of species composition by metagenomic sequencing.
    Liu Y; Ripp F; Koeppel R; Schmidt H; Hellmann SL; Weber M; Krombholz CF; Schmidt B; Hankeln T
    Bioinformatics; 2017 May; 33(9):1396-1398. PubMed ID: 28453677
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Challenges of next-generation sequencing targeting anaerobes.
    Conrads G; Abdelbary MMH
    Anaerobe; 2019 Aug; 58():47-52. PubMed ID: 30769104
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data.
    Arumugam K; Bağcı C; Bessarab I; Beier S; Buchfink B; Górska A; Qiu G; Huson DH; Williams RBH
    Microbiome; 2019 Apr; 7(1):61. PubMed ID: 30992083
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.