184 related articles for article (PubMed ID: 22160493)
1. PSS-3D1D: an improved 3D1D profile method of protein fold recognition for the annotation of twilight zone sequences.
Ganesan K; Parthasarathy S
J Struct Funct Genomics; 2011 Dec; 12(4):181-9. PubMed ID: 22160493
[TBL] [Abstract][Full Text] [Related]
2. PredictSuperFam-PSS-3D1D: A server for predicting superfamily for the annotation of twilight zone protein sequences.
Muthuvel Prasath K; Ganesan K; Parthasarathy S
J Struct Biol; 2020 May; 210(2):107479. PubMed ID: 32081792
[TBL] [Abstract][Full Text] [Related]
3. A protein block based fold recognition method for the annotation of twilight zone sequences.
Suresh V; Ganesan K; Parthasarathy S
Protein Pept Lett; 2013 Mar; 20(3):249-54. PubMed ID: 22591480
[TBL] [Abstract][Full Text] [Related]
4. Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences.
Mizianty MJ; Kurgan L
BMC Bioinformatics; 2009 Dec; 10():414. PubMed ID: 20003388
[TBL] [Abstract][Full Text] [Related]
5. SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.
Kurgan L; Cios K; Chen K
BMC Bioinformatics; 2008 May; 9():226. PubMed ID: 18452616
[TBL] [Abstract][Full Text] [Related]
6. DescFold: a web server for protein fold recognition.
Yan RX; Si JN; Wang C; Zhang Z
BMC Bioinformatics; 2009 Dec; 10():416. PubMed ID: 20003426
[TBL] [Abstract][Full Text] [Related]
7. Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity.
Jia Y; Huan J; Buhr V; Zhang J; Carayannopoulos LN
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S46. PubMed ID: 19208148
[TBL] [Abstract][Full Text] [Related]
8. WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.
Capriotti E; Calabrese R; Fariselli P; Martelli PL; Altman RB; Casadio R
BMC Genomics; 2013; 14 Suppl 3(Suppl 3):S6. PubMed ID: 23819482
[TBL] [Abstract][Full Text] [Related]
9. Protein folds and families: sequence and structure alignments.
Holm L; Sander C
Nucleic Acids Res; 1999 Jan; 27(1):244-7. PubMed ID: 9847191
[TBL] [Abstract][Full Text] [Related]
10. (PS)2-v2: template-based protein structure prediction server.
Chen CC; Hwang JK; Yang JM
BMC Bioinformatics; 2009 Oct; 10():366. PubMed ID: 19878598
[TBL] [Abstract][Full Text] [Related]
11. KB-Rank: efficient protein structure and functional annotation identification via text query.
Julfayev ES; McLaughlin RJ; Tao YP; McLaughlin WA
J Struct Funct Genomics; 2012 Jun; 13(2):101-10. PubMed ID: 22270457
[TBL] [Abstract][Full Text] [Related]
12. Use of a structural alphabet to find compatible folds for amino acid sequences.
Mahajan S; de Brevern AG; Sanejouand YH; Srinivasan N; Offmann B
Protein Sci; 2015 Jan; 24(1):145-53. PubMed ID: 25297700
[TBL] [Abstract][Full Text] [Related]
13. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Gewehr JE; Hintermair V; Zimmer R
Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694
[TBL] [Abstract][Full Text] [Related]
14. General overview on structure prediction of twilight-zone proteins.
Khor BY; Tye GJ; Lim TS; Choong YS
Theor Biol Med Model; 2015 Sep; 12():15. PubMed ID: 26338054
[TBL] [Abstract][Full Text] [Related]
15. MODBASE, a database of annotated comparative protein structure models, and associated resources.
Pieper U; Eswar N; Braberg H; Madhusudhan MS; Davis FP; Stuart AC; Mirkovic N; Rossi A; Marti-Renom MA; Fiser A; Webb B; Greenblatt D; Huang CC; Ferrin TE; Sali A
Nucleic Acids Res; 2004 Jan; 32(Database issue):D217-22. PubMed ID: 14681398
[TBL] [Abstract][Full Text] [Related]
16. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
[TBL] [Abstract][Full Text] [Related]
17. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
Saini HK; Fischer D
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
[TBL] [Abstract][Full Text] [Related]
18. Improving Protein Fold Recognition by Deep Learning Networks.
Jo T; Hou J; Eickholt J; Cheng J
Sci Rep; 2015 Dec; 5():17573. PubMed ID: 26634993
[TBL] [Abstract][Full Text] [Related]
19. Evaluation of protein fold comparison servers.
Novotny M; Madsen D; Kleywegt GJ
Proteins; 2004 Feb; 54(2):260-70. PubMed ID: 14696188
[TBL] [Abstract][Full Text] [Related]
20. Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles.
Li Z; Yang Y; Faraggi E; Zhan J; Zhou Y
Proteins; 2014 Oct; 82(10):2565-73. PubMed ID: 24898915
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
